CI01000051_05296858_05301152


Basic Information

Item Value
gene id CI01000051_05296858_05301152
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5296684 ~ 5301334 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05296858_05301152.mRNA
GTTTAAGAACCAGTGCATAACATTGATCTGTCTTTGCAGTGCATGAAGAGAATGCCTAACTTTTCAAGCCAGATGCCAACTCAGATGCAAGTTTCCCTTCTAAATGAGGGAGGTTTTGACCTTCACACTGGAACAAGTTTTGCATAGTCTTCCAAAACTTCAGAGGGTCAAAGGATGGAGGAAAACCAAGAACTTGAGGAGAAACAAGAACCCAGTATCACAGCACAAAGTGAGGACAAGGATACAAATGCGATGGTGTTGCAAAATGTCACTGAAAATTGTAATGGAAAGAAAAGAGTTTGCCCCGTGTGTCATAAAAGATTTGGTGCTCCATCCAAACTAAAAAGGCATTTCCTTATTCACACAGATCAGAGACCTTTTCAGTGTACCATATGCTGCCGTGGTTTCAAGTATCTCTATCATCTAAAATCACACCTTAGAACTCACACTAACCCTGTGAAGCAGAGGACACCATCACTCCAGAGCCAGAGAAACAACAGTGTGCCCTGTAATCAAGTGTCTAATTCAAGCTTAAAACACTCTGTGTGTAATGACCTTGGTGGAACAGTTAGATCTTACTCTCCAAACCATCTAACTGCCCAAAGCGATACCAATTCAAGTTTTGCATATTCTTCCAAAACTTCAGAGGGTCAGTGGATGGAGGAAAACCAAGAATTTGAGAAGAAACAAGAGCCCAGTTTCACAACACAAAGTGAGGACAAGGATGCAAATGCGAAGGTGTTGCAAAGTATCACTGAGAATTGTAGTGGAAAGAAAAGAGTTTGCCCCGTGTGTCATAAACGATTTGGTGCTCCATCCAAACTAAAAAGGCATTGCCTTATTCACACGGATCTGAGACCTTTTCAGTGTTCCATATGCTGCCGTGGTTTCAAGCATGTCTATCATCTAAAAGCACACCTCAGAACTCACACTAACCCTGTGAAGCGGAAGACACCATCACTCCAGAGCCAGAGAAACAACAGTGTGCCCTGTAATCAAGTGTCTAATTCAAGCTTAAAACACTTAATGTGTTTTGGCCTTAGTGGAACAGTTAGATCTTACTCTCCAAAACATCTTACTAGCCAAAGCGATACAAATTCAACAGATAATCAAAAGCCAGCTGCAGTAGACTTAATCAATACTAATTCAGGTACCACTAGTGTTGAAATTAGCAAAAATGTTTCAGAAAGTGGTTCAAAAAATAAAAAGGGACATTGGTGCCCTGTATGTTTAAAATGCTTTAAAGCCCCATCAAAACTCAGGCGTCACATTCTGATTCATACAGATCAAAAGCCTTTCAAATGCTCTGTGTGCTTTAAAGATTTCCGACAAAAACACCACTTGAAAGATCACAGGTGTAAGGAAGAATTTAGACCGAAATGCAACTCTATTTTGAGTGATATGCAGGTAAGAGAGAAAACAGTCCAGCAGAATTCTGAGGGAGGTGTGGTAGCTACCACAGTAGATGCTTCAAGTGATATTCAAGGTAGGTGTTTTAAACCGGGATTGAGCTCTTCATCACCAGATGTAGTCACAATTGCTGAAAAAAGGATCCCTCCAGTATCCATGTCTTCTCATCTCATGTGTCCACTTCCACTCAAAAAGAAAACTGGAAATCAGTGTAAAATATGCTGGAAGATATTCAGTTACCCTTCTAAACTAACTCGACATCTGTTCATTCATTCCGACGTTAAGCCTTACACTTGCACGATCTGCAGAAAGTCATTCAAGGAGGCCGGTTGTTTCCATAAACACCTCAAGATACATACAGGAGAAAAAAACAACCCTTCTAGGTTGCATGGAGTGTCGCAGAAATATGGTACCGAATGTTCAACACCTGGAGCTTTATATGCTACAAATAACCGCAAACCGGATGGCGGTAATGTGTCTTTACCTCAGATATTTGACTCTATAGACACCAAAAGGTATGAAATGCTTGAATGCAAAAGCAAGCTTAACCAAAATGTCCCCTTGACAGAGTCAAGTACTGTAGAGATTAAGAGCTCTGACACATTGATAAATTCTGAGGCACAGATCGCATTCTCCAGCCCATCGTACCTTAAGCGCCAACATAAAGGTGCGCATCAGTGCTGCATTTGTCTGAAGAACTTTCCATATCCTTCCAAGCTCTCTAGACATATTTTGAGCCACACAGATTTCAGACCATTTAAGTGCCACATGTGCTCAAAATCATTTAGAGAGCTGTCTTATTTACAGTGCCACCAGAAGATCCACAAAAAAAAGGGTCAGGACATAACTTCAGGTCATTTGGAACAAGAGCATACGGTTTCTTTTGGTAATACTGCGATTTGTAAAGACCAAGATGTTCAAATCTCCTCACAAGATGGAGCTGAAGACTTTTCTCCAGCATACAAAGATCAAAATATGGTCACAGATAATATGCCATCTCAAACAATGAATGGTGACTGCAGTGATTCAGGTGTGTTTTTCTCAAACGGTACTAGTCTCCTAGAGAATGTTCAGATCAAGTCAGAGGATGTTTTCCAGTGCAACAACAAATCTGTTTGGGAACTGACACATAAAACTGACATCTCGGGGCTTGTTGAGAAAAAGCCATCTGACATTGTGCCTTTCGGCAGGGTGAGTGACTGTCCACCCAAAACTGACTCATCTCTTTGTCATTTTCCTACCGAACCAAGAACTGAGGAAAAATGGTCACATCACATGGATGATATTGAAGATTCTGCCTTTGTGGACTTTGACATTGTTAAATATGTCCCTGATTCTTACGTGCCCCATTCAGATGAGTATCAACAGAAACCCGACATTACCAAACTCGGAGAAGAAGTTGATGTGGGGCATTTGGACTTTCAGGATCCAGCATTATATGCACATAAATGTGCAAACAGATACCCTGAAAAGAAAATAAGGAAATCCCACCAGTGTGACATTTGCTTAAAAGTCTTCAATGCGCCATCTAAACTGAAGAGACACAGTGTTACACACACCGGCCAAAGGCCATTCCAGTGCACACGGTGTCAGAAGACCTTCACGCTGCCCCATCATCTGAAAACACACATGCTGTCCCACAGTCATTACTTTTTATTTAGTAATTACAGAATGGTGATCATAGTGTGATGTCATTTGCAGTAGTTCCATCTTTATCCACTAGATGGTGTAATGTGCTTTCTCACTCTTAACAATTTATAAAAGTAATTGGCACGTATGGTGGCCCGCAAATGTCTATTGCAGGGGAAATGATACATCCTTATGACTTTTACCAAGCTACCTACCAAACAGATTAGCACAGTATGGCTTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05296858_05301152.mRNA True 3281 mRNA 0.41 3 5296684 5301334

Neighbor

gene id symbol gene type direction distance location
CI01000051_05254556_05270993 MEIS2B, MEIS2 coding upstream 24856 5254556 ~ 5271828 (+)
CI01000051_05174862_05175926 NA coding upstream 120177 5174108 ~ 5176507 (+)
CI01000051_05126681_05142536 NA coding upstream 154067 5125751 ~ 5142617 (+)
CI01000051_05072860_05074568 GLRX5 coding upstream 221810 5072629 ~ 5074874 (+)
CI01000051_04796878_04799272 FLRT2 coding upstream 497363 4796878 ~ 4799321 (+)
CI01000051_05314994_05317995 ACTC1B, ACTA2, ACTA1, MGC53823, ACTC1, MGC75582, ACT3, ACTC1A, ACTA1A, ACT2, ACTC1.L coding downstream 13110 5314444 ~ 5318185 (+)
CI01000051_05320361_05322570 GJD2B, GJD2 coding downstream 19027 5320361 ~ 5323905 (+)
CI01000051_05401881_05405868 NA coding downstream 100547 5401881 ~ 5405886 (+)
CI01000051_05454570_05480649 NA coding downstream 153198 5454532 ~ 5480935 (+)
CI01000051_05514127_05516929 ZFP36L1B, ZFP36L1 coding downstream 211422 5512756 ~ 5517785 (+)
G220730 NA non-coding upstream 91056 5205426 ~ 5205628 (+)
G220727 NA non-coding upstream 93933 5202409 ~ 5202751 (+)
G220726 NA non-coding upstream 97000 5199405 ~ 5199684 (+)
G220725 NA non-coding upstream 97687 5198774 ~ 5198997 (+)
G220701 NA non-coding upstream 119117 5177338 ~ 5177567 (+)
G220773 NA non-coding downstream 47473 5348807 ~ 5406672 (+)
G220807 NA non-coding downstream 74348 5375682 ~ 5376525 (+)
G220830 NA non-coding downstream 131610 5432944 ~ 5433210 (+)
G220844 NA non-coding downstream 182171 5483505 ~ 5484126 (+)
G220846 NA non-coding downstream 184144 5485478 ~ 5485721 (+)
G219803 NA other upstream 244651 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 921354 4372658 ~ 4393677 (+)
G218981 NA other upstream 2049811 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3230601 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4571980 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1524465 6825895 ~ 6830637 (+)
G221319 NA other downstream 2040707 7342041 ~ 7342546 (+)
G221386 NA other downstream 2108189 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2804309 8209722 ~ 8214696 (+)
G222727 NA other downstream 3041608 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017929 znf770 coding NC_007131.7 CM002904.2 10057750 ~ 10065130 (-)