Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000051_05314994_05317995 |
| gene name | ACTC1B, ACTA2, ACTA1, MGC53823, ACTC1, MGC75582, ACT3, ACTC1A, ACTA1A, ACT2, ACTC1.L |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 5314444 ~ 5318185 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| actc1b | Predicted to be part of dynactin complex. Is expressed in several structures, including EVL; mesoderm; musculature system; pericardial region; and trunk. Used to study nemaline myopathy. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1). |
| acta2 | Acts upstream of or within heart contraction. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including cardiovascular system; gut; mesoderm; musculature system; and swim bladder. Human ortholog(s) of this gene implicated in Moyamoya disease; megacystis-microcolon-intestinal hypoperistalsis syndrome; and thoracic aortic aneurysm. Orthologous to several human genes including ACTA2 (actin alpha 2, smooth muscle). |
| actc1a | Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1). |
| acta1a | Acts upstream of or within skeletal muscle fiber development. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including adaxial cell; fin; musculature system; pericardial region; and trunk. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 3. Orthologous to human ACTA1 (actin alpha 1, skeletal muscle). |
| acta1 | Predicted to enable ADP binding activity; ATP binding activity; and myosin binding activity. Predicted to be a structural constituent of cytoskeleton. Involved in skeletal muscle thin filament assembly. Located in actin filament; stress fiber; and striated muscle thin filament. Implicated in congenital fiber-type disproportion and nemaline myopathy 3. |
| actc1 | Enables ATP binding activity; microfilament motor activity; and myosin binding activity. Involved in actin-myosin filament sliding and heart contraction. Located in actin filament and sarcomere. Implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. |
| id | name | namespace |
|---|---|---|
| GO:0009991 | response to extracellular stimulus | biological_process |
| id | description |
|---|---|
| K12314 | ACTC1; actin, alpha cardiac muscle |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000051_05314994_05317995.mRNA | True | 1874 | mRNA | 0.47 | 7 | 5314444 | 5318185 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_05296858_05301152 | NA | coding | upstream | 13110 | 5296684 ~ 5301334 (+) |
| CI01000051_05254556_05270993 | MEIS2B, MEIS2 | coding | upstream | 42616 | 5254556 ~ 5271828 (+) |
| CI01000051_05174862_05175926 | NA | coding | upstream | 137937 | 5174108 ~ 5176507 (+) |
| CI01000051_05126681_05142536 | NA | coding | upstream | 171827 | 5125751 ~ 5142617 (+) |
| CI01000051_05072860_05074568 | GLRX5 | coding | upstream | 239570 | 5072629 ~ 5074874 (+) |
| CI01000051_05320361_05322570 | GJD2B, GJD2 | coding | downstream | 2176 | 5320361 ~ 5323905 (+) |
| CI01000051_05401881_05405868 | NA | coding | downstream | 83696 | 5401881 ~ 5405886 (+) |
| CI01000051_05454570_05480649 | NA | coding | downstream | 136347 | 5454532 ~ 5480935 (+) |
| CI01000051_05514127_05516929 | ZFP36L1B, ZFP36L1 | coding | downstream | 194571 | 5512756 ~ 5517785 (+) |
| CI01000051_05523573_05525861 | NA | coding | downstream | 205177 | 5523362 ~ 5527007 (+) |
| G220730 | NA | non-coding | upstream | 108816 | 5205426 ~ 5205628 (+) |
| G220727 | NA | non-coding | upstream | 111693 | 5202409 ~ 5202751 (+) |
| G220726 | NA | non-coding | upstream | 114760 | 5199405 ~ 5199684 (+) |
| G220725 | NA | non-coding | upstream | 115447 | 5198774 ~ 5198997 (+) |
| G220701 | NA | non-coding | upstream | 136877 | 5177338 ~ 5177567 (+) |
| G220773 | NA | non-coding | downstream | 30622 | 5348807 ~ 5406672 (+) |
| G220807 | NA | non-coding | downstream | 57497 | 5375682 ~ 5376525 (+) |
| G220830 | NA | non-coding | downstream | 114759 | 5432944 ~ 5433210 (+) |
| G220844 | NA | non-coding | downstream | 165320 | 5483505 ~ 5484126 (+) |
| G220846 | NA | non-coding | downstream | 167293 | 5485478 ~ 5485721 (+) |
| G219803 | NA | other | upstream | 262411 | 4914974 ~ 5052033 (+) |
| CI01000051_04374052_04393328 | NA | other | upstream | 939114 | 4372658 ~ 4393677 (+) |
| G218981 | NA | other | upstream | 2067571 | 3245443 ~ 3246873 (+) |
| CI01000051_02060996_02061735 | NA | other | upstream | 3248361 | 2060534 ~ 2062355 (+) |
| CI01000051_00638200_00720543 | CDC42BPB | other | upstream | 4589740 | 637590 ~ 720669 (+) |
| CI01000051_06825895_06830637 | NA | other | downstream | 1507614 | 6825895 ~ 6830637 (+) |
| G221319 | NA | other | downstream | 2023856 | 7342041 ~ 7342546 (+) |
| G221386 | NA | other | downstream | 2091338 | 7401175 ~ 7413007 (+) |
| CI01000051_08211233_08214513 | NA | other | downstream | 2787458 | 8209722 ~ 8214696 (+) |
| G222727 | NA | other | downstream | 3024757 | 8342942 ~ 8343448 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_017927 | ACTC1 | coding | NC_007131.7 | CM002904.2 | 9970786 ~ 9980318 (-) |
