CI01000051_05320361_05322570 (GJD2B, GJD2)


Basic Information

Item Value
gene id CI01000051_05320361_05322570
gene name GJD2B, GJD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5320361 ~ 5323905 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05320361_05322570.mRNA
ATGGGGGAATGGACAATTCTCGAGCGTCTCCTGGAGGCGGCTGTCCAACAGCACTCTACTATGATTGGGAGGATCCTACTGACAGTGGTGGTGATCTTCCGGATTCTAATTGTGGCGATAGTTGGAGAGACCGTGTACGACGATGAGCAGTCCATGTTCGTGTGCAACACATTACAGCCAGGCTGTAACCAAGCTTGCTATGACAAAGCATTCCCAATATCTCACATCAGATACTGGGTGTTCCAAATCATCATGGTATGCACCCCCAGTCTATGCTTCATCACATACTCAGTGCATCAGTCGGCCAAACAGAAGGAGCGGAGATACTCCATGGTCTACCTGTCCCTCGACAAAGACGACTCAATGAGACGAGACGACAGCAAAAAAATCAAAAACACCATCGTGAACGGAGTACTTCAGAACACTGAAAACTCCACCAAAGAATCCGAGCCCGACTGTTTGGAAGTGAAAGAGATCCCCAGTTCAGCCATGAGAACTACCAAATCTAAAATGAGAAGACAAGAGGGCATCTCCAGGTTTTACATCATTCAGGTGGTTTTCAGGAACGCGCTGGAGATCGGCTTCTTGGTGGGGCAGTATTTCTTGTACGGATTCAACGTGCCGGCCGTGTACGAGTGCGATCGGTACCCTTGCATCAAAGACGTCGAATGCTATGTTTCGAGACCCACGGAGAAAACCGTGTTCCTCGTCTTCATGTTTGCGGTCAGTGGGATTTGCGTGGTGCTCAACCTGGCAGAACTCAATCACCTGGGCTGGAGGAAAATTAAAACGGCGGTGAGGGGGGTGCAGGCCAGGAGGAAGTCCATATATGAGATCAGAAACAAGGACTTGCCACGGATGAGCATGCCTAATTTCGGCCGCACCCAGTCGAGTGACTCTGCCTACGTCTAATGCTCCCTTCATGTAGTTCATCAGAGCAGTGGTGCTCAATCCAGGTCCAAGAAGACTCCATGTTGCACGTTTTGGATGTTTCCCTCATCTGAAACACCCATTTCAAGTCTTGGAGCCTCTGCTCAAAAAGAATAGTTCACCCAAAAATCAAAATTCTGTCCATTTATTCACCTTCATGTCGTTCTGTGGAACACAAAGGAAGATGTTTTGAAGAGTGCTTAGTCCATACAATGAAAGTCAACAACATTGTACTCCATTAACACCACTGAGATTTTTTTTCTCCATAATATCTTCTGTTGTGTTCCACAGAACGACATCGGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGTATCTAAAATGCGCAGAAACTCCAGGACCAGAACTGAGGACCACTGTATTAGATTATATACAGAAGACAAGTTATGTTATGAACTGTTCATCTCACCTGGTTCATGGTGGGGTAGATGGATTTTATTTGTTTGTTATGGACAACCAGAACAAATGGACCAAACGTTTGTTTCTTATCAGTTACTGAAGGGCACTGATGCAACTTTTTTATAGGTCAGAATGGAAAGCTTATGTTTTCAACATTTGTTTATTTCTTCGTTCACATGATCAGCTGAACCCGAAATATGTTTTGCACTAATATGGATTTAAAGAAGCCAAAACTAACCCGAATCGTGCTGTGAAGGTCTTTTGTTACTTTATGTTGTATTCTCATTCTGGTTTTAGATCGCACATATGATTATGTTTCAGTTTACTCACCGCAACTAGTTAGACTGCAGTTCACATATGTTTATCCATACTATATGAATCATATCTCTCTTTTGGCTTAGATAGATTGGCATCTTTAATGATTTGGTTGCCTGTGCTTGCACCACTGACCTTAACGTAAGTTATCGTTCCGTTATATTTAAGCTGACTTGCAGATCGGTAGCCGGTGAACTGGCCAATGCTGCATAACGCTTAACTGTCTATTTTTTGTATTTATTTATTTTATTTATTAATGTATTGGATTTATTTATTTATTTTTTGACACCAAAGCGCCCATTGCTTTCATTTGTGTGAAAAGGATATATTGCTTTTATGTATTCAAGTGCCATATATGTACATAGATATATACATATTATAGTATATTGTAATCCTTATCGTGAGATATGAATTCCACAAACTCTTCAAAGAACGTCCTATCCCTTTAATGTGAGATGTTGGGGAATGGAAGAGTGGGTAAAAAAAAACAAAAAAAACATTCATACATATTTTGCATTCATCAAAAGTATGATATTACATTTAAAGTACATAGAAAACACAGTTGATAAGAAATCAGTGA

Function

symbol description
gjd2b Enables gap junction hemi-channel activity and voltage-gated ion channel activity. Acts upstream of or within cell-cell signaling. Located in gap junction. Part of connexin complex. Is expressed in several structures, including heart; kidney; liver; nervous system; and neural tube. Orthologous to human GJD2 (gap junction protein delta 2).
gjd2 Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within action potential; chemical synaptic transmission; and visual perception. Predicted to be located in gap junction. Predicted to be part of connexin complex.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K07373 GJD2, CX36; gap junction delta-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05320361_05322570.mRNA True 2247 mRNA 0.41 2 5320361 5323905

Neighbor

gene id symbol gene type direction distance location
CI01000051_05314994_05317995 ACTC1B, ACTA2, ACTA1, MGC53823, ACTC1, MGC75582, ACT3, ACTC1A, ACTA1A, ACT2, ACTC1.L coding upstream 2176 5314444 ~ 5318185 (+)
CI01000051_05296858_05301152 NA coding upstream 19027 5296684 ~ 5301334 (+)
CI01000051_05254556_05270993 MEIS2B, MEIS2 coding upstream 48533 5254556 ~ 5271828 (+)
CI01000051_05174862_05175926 NA coding upstream 143854 5174108 ~ 5176507 (+)
CI01000051_05126681_05142536 NA coding upstream 177744 5125751 ~ 5142617 (+)
CI01000051_05401881_05405868 NA coding downstream 77976 5401881 ~ 5405886 (+)
CI01000051_05454570_05480649 NA coding downstream 130627 5454532 ~ 5480935 (+)
CI01000051_05514127_05516929 ZFP36L1B, ZFP36L1 coding downstream 188851 5512756 ~ 5517785 (+)
CI01000051_05523573_05525861 NA coding downstream 199457 5523362 ~ 5527007 (+)
CI01000051_05579061_05584087 CRIP2 coding downstream 255156 5579061 ~ 5584087 (+)
G220730 NA non-coding upstream 114733 5205426 ~ 5205628 (+)
G220727 NA non-coding upstream 117610 5202409 ~ 5202751 (+)
G220726 NA non-coding upstream 120677 5199405 ~ 5199684 (+)
G220725 NA non-coding upstream 121364 5198774 ~ 5198997 (+)
G220701 NA non-coding upstream 142794 5177338 ~ 5177567 (+)
G220773 NA non-coding downstream 24902 5348807 ~ 5406672 (+)
G220807 NA non-coding downstream 51777 5375682 ~ 5376525 (+)
G220830 NA non-coding downstream 109039 5432944 ~ 5433210 (+)
G220844 NA non-coding downstream 159600 5483505 ~ 5484126 (+)
G220846 NA non-coding downstream 161573 5485478 ~ 5485721 (+)
G219803 NA other upstream 268328 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 945031 4372658 ~ 4393677 (+)
G218981 NA other upstream 2073488 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3254278 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4595657 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1501894 6825895 ~ 6830637 (+)
G221319 NA other downstream 2018136 7342041 ~ 7342546 (+)
G221386 NA other downstream 2085618 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2781738 8209722 ~ 8214696 (+)
G222727 NA other downstream 3019037 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017926 gjd2b coding NC_007131.7 CM002904.2 9958506 ~ 9963713 (-)