CI01000051_05454570_05480649


Basic Information

Item Value
gene id CI01000051_05454570_05480649
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5454532 ~ 5480935 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05454570_05480649.mRNA
ATATTTAAGTGCTCAGATCGAAGCTGCTCCCTCTCAAAATGAAGAACTGCTGGGTATTTGCTTTACTTTTTACAAATGTTTATTTCACGAATGCGATTCAAAAGGACAAACTTTTCCCTTTTGGACTATCTGAAGGTGATTCAGTTCTTCAAGAAGGTGATGATGAAGTGTCTGAAGCCCTGAAGCTAAAAAAGCCATTACAGTTCTACGAAGTGCAGTTCAACATTCTTTATGTTGCCACAAATGGATTCTTGTCCCTTCAGCTTCCTCCTGAAGAGAGTCAGTATTTAAGAACCATGTTTCCTCTGAGCTTCTCAGCCATAGCACCTTTCCTGACAGACATAAGTTCAGGACATGGGAAAGGATCTGTGTTTTACCGTGTGGAGGAATCATTAGACGTATTAAACCGGGCTTCTGAAATGGTGCAGCATGGTTTCACTGGTTCTACATTTAAGTCTAGCCACACAGTCATCGCCACATGGGACAACGTTGCATGTGAAGAGGACAGGATGGTTACTGCACAGACCATCCAACTGGTCCATGCTGTCATTGCCGTTCTGGTTACTATGGCAATGGCAGACAATGCTTACCCATGGCCTTTAAGTGGAAAGCTGAGTGGCCGTGTTTCTGTTGGAGACACTAAAGCTCAGCTAAACAATGTGGACATCCATGGCTTTGCTGTGGTGGGAGAAGGACGTGTATACATCTCCATCAGTCCTGTCCCAACTCAGGCAGGTTGGGCTTTGATGGCTGTGGGCCCGCTGGTCTCCATATTTGGTTGGCTGTTTGCTCTTGAGCTCCAAGACCATCCGAATGGCTTCAGCATAACTGGTGCTGAGTTTTCTCAATGGGCAGAACTGGTTTTCAGCCCACAAGGACAGCATGTTACTATTATTCAAGAGGCTCAAGGATTGGATTCATTCAACCACTTGAATTTTGACATAAGGATCAATGGAGATTTACCTACCATTCCCAGTGGTGCTAAAGTTCATATTCTGCCATATAAAGAGACCTATCAATACAACCAATCAGTTGTGACATCATCTTCACTGCGAGAGTACATGGTGGTGTCAGAAAATGGTGGATCTGAGACATTCTCCTACCTGCTACACCAGAATGTGAGTTTCCGTAACTGTGAGCATGGCCCATGGACCATACCGGACTTTCAGCAAGTCAATGTGGAGCATTTGATGGTCATGTTCACTGAAGGAACCACGCTTAGATTTGCCATAACCAACCAAGTGGGACCTGTAGGAGGTGAGCTCCCTGGGCTTGTGGAGTTGAACCCCTGTTCAACTGGGAAGCACCATTGTGACCCCATGGCCCTCTGTCTGCCAGGGGACGGCACTCAGTACCACTGTCAGTGTGCCATGGGCTTTCAGGGGGATGGACGCAACTGCTATGGTACACATTTTTCAGTGTTCATCTTTGACATCAAGCCAACTCCTTGCTATGACTGCTCTTTTGAGACTTCCCTTAGAGACTATGTAGATGAGTGTGCTGAGGGACTCAGTTCCTGCGGTCCTCACTCTGAGTGTGTGAACATGCCGGGTGGCCATCACTGCCACTGTGAATCTGGCTTTGAGTTTGACCTCGATTTGCATGTGTGTGTAGATATTAATGAGTGTTTCCTGCAGCTCTGTCATCCGTTTGCTTCCTGCTCCAACACCCAGGGCTCGTTCCACTGTCAGTGCTGGCCTGAATACAAGGGCGACGGCTTCCTCTGCCAACCACCACAGAAGCCCAAACCCCCATTAACTGTGTGCCAGCAGCACAGAGATAGTCTGCAAGAGAGTCTAAGCATCTACCAAGGCCTTGAGGCCTTCATTCCTCAGTGTGATGAGAAAGGGCAGTACAAACCCCTGCAGTGTCTGGGCACCACTGGCCACTGCTGGTGTGTGGACAGTAGAGGGCAGGAGAGATTGGGCACCAGGACAATGCCTGGCACAGTGCATGCCAACTGTGATCAGCCAGCTGCCCTGGTTCCTCGTGTGGAGACTGTGTGCGAGCGCTGGAGGCTTTCACTCATGAGTCACTATAATGGTCAGCCGTCCTCTCAGGACTACATGCCCCTGTGTGACACTCAAGGGAATTTCCTGCCTGTGCAATGTTATGGCATCAGCAGTTTCTGCTGGTGTGTGGATCATCAAGGCGTGGAAATTATTGGAACACGATCCTACGATGATGTAAAGCCCCCCTGTATCTCAGATGATGCCCCCCCACTGAACAATGCTTTGATGTATCCTGTCATAAGCTCATCCCCTTCAGGACCTGCTATCCTTTATGCACAAGCCTCACAGATTGGAGTTATTCCTCTTGATGAAACAGACCCAGTTCAAGAAAAATCCACTGTTTTACTGGCCTTAAAGGACTCCGTTGTGATTGGAATGGATTATGACTGTCAGGAGAACATGTTATATTGGACAGATTTTGGACGACATACCATTAACAGAGTGGTCTTAGAATTTGGGTCTGAGCCAGAGGCTATTATCAGCCAAGGCTTGGTCCAGCCAGAGGGAATTGCAGTGGACACTGTGCACAGGAAGCTGTTCTGGGTAGACAGTGGGAAAGACAGGATTGAGACATCTGGTCTGGATGGCAGGAACAGAAAAGTGCTGATTGATTCTGATTTGGTCAATCCCAGAGCCATCACAGTGGACGCTAAGAGGAGAACCTTATATTGGACCGACTGGAACCGTGATGCTCCCAAAATAGAGAGCTCATCACTGGAGGGACGTAAGAGGAAAGTACTGGTGCAAGTGGGTCTCATGTTGCCCAATGCCTTGACACTGGACTTAACCACAAATCAGCTGTGCTGGGCAGATGCAGGATCAAAGAAACTGGAGTGCATATCTCCAGATGGGACTCAGAGACATGTGTTCCAGGATGCTTTGGACTATCCGTTCAGTCTGGCCATCTATAACAGCCACTTTTACTACACTGACTGGGAGAGTCTGACCCTCAGTAAGGCCAAAAATACAAGGGTTATAGGAGCAGAGAGAGTCCAAAGAATCTCTTCCGCAAGACTGCTCCCACAACTCCTCGCCCTTGTCTTCGTATGACTCCAAACCTATGTTGTTCTGCTTGGTTAGAATAAGGCCTAGTTTCACTTTATTCTCTCGTCCATGGGAAGGTGTGGAATAATATTTGAGCATTGCCATGGGGTTTCTGTAAACCCACGGTTTGATATTGCTAAACAAACAGGATGGGTTACCCACAAGGCACAAGAACCGCCAACAGACGGCAAGACTTCACCACTGCAGAGGCCAGACCTCCCAGCCTGTGGAGGGCAGCCAACACTGGCTTCTATCCTTCAGCCTCAGACCCCACAGCAGGTCAGAGAGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05454570_05480649.mRNA True 3348 mRNA 0.48 17 5454532 5480935

Neighbor

gene id symbol gene type direction distance location
CI01000051_05401881_05405868 NA coding upstream 48646 5401881 ~ 5405886 (+)
CI01000051_05320361_05322570 GJD2B, GJD2 coding upstream 130627 5320361 ~ 5323905 (+)
CI01000051_05314994_05317995 ACTC1B, ACTA2, ACTA1, MGC53823, ACTC1, MGC75582, ACT3, ACTC1A, ACTA1A, ACT2, ACTC1.L coding upstream 136347 5314444 ~ 5318185 (+)
CI01000051_05296858_05301152 NA coding upstream 153198 5296684 ~ 5301334 (+)
CI01000051_05254556_05270993 MEIS2B, MEIS2 coding upstream 182704 5254556 ~ 5271828 (+)
CI01000051_05514127_05516929 ZFP36L1B, ZFP36L1 coding downstream 31821 5512756 ~ 5517785 (+)
CI01000051_05523573_05525861 NA coding downstream 42427 5523362 ~ 5527007 (+)
CI01000051_05579061_05584087 CRIP2 coding downstream 98126 5579061 ~ 5584087 (+)
CI01000051_05588671_05593438 RDH14B coding downstream 107357 5588292 ~ 5593977 (+)
CI01000051_05657394_05672861 SYT14B, SYT14 coding downstream 176459 5657394 ~ 5674202 (+)
G220830 NA non-coding upstream 21322 5432944 ~ 5433210 (+)
G220773 NA non-coding upstream 47860 5348807 ~ 5406672 (+)
G220807 NA non-coding upstream 78007 5375682 ~ 5376525 (+)
G220730 NA non-coding upstream 248904 5205426 ~ 5205628 (+)
G220727 NA non-coding upstream 251781 5202409 ~ 5202751 (+)
G220844 NA non-coding downstream 2570 5483505 ~ 5484126 (+)
G220846 NA non-coding downstream 4543 5485478 ~ 5485721 (+)
G220850 NA non-coding downstream 9133 5490068 ~ 5490287 (+)
G220856 NA non-coding downstream 17169 5498104 ~ 5498659 (+)
G220861 NA non-coding downstream 40922 5521857 ~ 5522786 (+)
G219803 NA other upstream 402499 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 1079202 4372658 ~ 4393677 (+)
G218981 NA other upstream 2207659 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3388449 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4729828 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1344864 6825895 ~ 6830637 (+)
G221319 NA other downstream 1861106 7342041 ~ 7342546 (+)
G221386 NA other downstream 1928588 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2624708 8209722 ~ 8214696 (+)
G222727 NA other downstream 2862007 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location