CI01000051_05588671_05593438 (RDH14B)


Basic Information

Item Value
gene id CI01000051_05588671_05593438
gene name RDH14B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5588292 ~ 5593977 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05588671_05593438.mRNA
GTTTTTATAGGCCTAATATAATATTTAATAATGTTTGCACAGAAAATAGCCTACAAGGTCATATCGAAGGCTAAAACAAACTATTAGAGTTAATGAGAGGAGTAGGAACAAACAAATAAATGTTCTTTAAAAAAATAATAATAATAATAATTACCTAAAATTAAAAATATATATTAAGATTATATTATAAATATAAAACATTATAATTTTAGGTATACATACTATAATTCGTGTAATAAACTAGTAAGCTTTAACTGTCAACCTCAAAAATAGGAAATATATGTTCAATAATAACAAAGCAGTGCATTCTGGGTAATGTGTTCAACAGTGCTTGCATCACACACACACTGTCATTCAACACTTTGGCATTCCTGTACTGATGTCGGCAGCGGTAGTTTTAGCCGCTGTCCTCGGCGGTGGGGTTCTCTTCATTGCCCGGAGAATATTCTGCAGGCGGAAAGCGCTGAAATTACTGAGTTACCCAGCGGGTCTGATGCGCGGAAAGACTGTGATAGTGACCGGGGCGAACTGCGGCATCGGGAAGGCGACGGCAGCGGAGCTTCTGAAGCTGCAGGCCCGTGTAATCATGGCCTGTCGGGACAGGCAGAGGGCTGAGGAGGCGGCCCGGGACATCAAGAATCAAGCCGGTCCGAATCAGGGAGAGATCGTGATCAAACACTTGGACCTCGCGTCGCTTCAGTCCGTGCACAGCTTCTGCGAGGAAGTTATCAGGGTTTGTTTACATATATCTCCTTCACTTTCAGTCCCTGAAACTGTGTTGCATGAACTGCACCATGGAGAGGAGCCAAGGATTGATGTTCTTATCAACAATGCTGGTCTCTACCAGTGTCCCTACAGTAGGACAGAAGAAGGTTATGAAATGCAGCTGGGAGTGAACCACCTGGGTCACTTCCTTCTGACACATCTCCTGCTTGACCTCCTGAAGCAGTCGGCTCCCAGCCGTATCGTCGTAGTTTCCTCCAAACTCTACAAGTATGGCAGCATCAACTTCGAGGACTTGAACAGTGAACAGAATTACAACAAATCTTTTTGCTACAGCCAGAGCAAGCTTGCCAACCTACTGTTCACTCGCGAGCTGGCCCGCAGGCTGGATGGGACTGGGGTAACTATAAATGCCCTCACTCCGGGTATCGTAAGGACCAGATTGGGCCGGCACGTCAACATCCCCCTGCTGATTAAGCCTCTTTTCTTGCTGGTCTCTTGGTTGTTCTTCAAAAGCCCACTGGAGGGTGCTCAGACCCCACTATACCTGGCATGCTCGCCTGAAGTTGAGGGTGTGTCTGGAAAATGCTTCGCTAATTGCAAAGAAGAACAATTGCTTTCTAAAGCCACAGATGACCATACTGCCAAACGGCTGTGGGACCTGAGTGAAAGCATGGTCGGCCTTAGAAGGTGAAGGGAAGAAGCAGAACTGCCTTTCACAAATGTGGCAATTTCAAATCTCGAACATTAGTGAAATGGATTTTTTGGGATGTTTTTTGGCCAAGTACCTGAGGGACTTACTGGATAAGAGACAGGAAATTAAAATGTCCATCTGTTCCCCGTATCTTTGCTGCAGTGTTTTCAGAGATGGCCTCAGGCTTGTGACTCACTCTTCTCTGTGAATGAGAGCCTGAAAGTATCGAGTCCAACATATCCCTTGAATACAAATGACAGGAACAACGTGCCCAAGAAACATATGCCTCAGAGCTAAGATGAGTACAGAATAACATGAACACTATTGCATATCTCTCGACATAGATTAAAGAGCAAGATTGTTGAATGTTGTTCTGCAATGTATTTTACAGACTTATTTATGAAGTGAATTAGTGACAATTTAGCCTCTCAGAATATCATCTTTTCATAATGCTGTATAGTAGACCTCGCAACTCCCACCCTGTTACTTATTTCAAGATAGATTTGAAAATGTTTGTGACATCCCAGTGTCCAAACAAA

Function

symbol description
rdh14b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RDH14 (retinol dehydrogenase 14).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K11162 RDH14; retinol dehydrogenase 14

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05588671_05593438.mRNA True 1956 mRNA 0.44 2 5588292 5593977

Neighbor

gene id symbol gene type direction distance location
CI01000051_05579061_05584087 CRIP2 coding upstream 4205 5579061 ~ 5584087 (+)
CI01000051_05523573_05525861 NA coding upstream 61285 5523362 ~ 5527007 (+)
CI01000051_05514127_05516929 ZFP36L1B, ZFP36L1 coding upstream 70507 5512756 ~ 5517785 (+)
CI01000051_05454570_05480649 NA coding upstream 107357 5454532 ~ 5480935 (+)
CI01000051_05401881_05405868 NA coding upstream 182406 5401881 ~ 5405886 (+)
CI01000051_05657394_05672861 SYT14B, SYT14 coding downstream 63417 5657394 ~ 5674202 (+)
CI01000051_05712567_05728993 YLPM1 coding downstream 118590 5712567 ~ 5729691 (+)
CI01000051_05757566_05757955 C12ORF57 coding downstream 163589 5757566 ~ 5758141 (+)
CI01000051_05831209_05933202 DLGAP2 coding downstream 237232 5831209 ~ 5933637 (+)
CI01000051_05935542_05939529 NA coding downstream 341466 5935443 ~ 5939632 (+)
G220889 NA non-coding upstream 16555 5571458 ~ 5571737 (+)
G220861 NA non-coding upstream 65506 5521857 ~ 5522786 (+)
G220856 NA non-coding upstream 89633 5498104 ~ 5498659 (+)
G220850 NA non-coding upstream 98005 5490068 ~ 5490287 (+)
G220846 NA non-coding upstream 102571 5485478 ~ 5485721 (+)
G220922 NA non-coding downstream 82487 5676464 ~ 5676963 (+)
G220930 NA non-coding downstream 145602 5739579 ~ 5740171 (+)
G220916 NA non-coding downstream 147081 5741058 ~ 5744465 (+)
G220923 NA non-coding downstream 195551 5789528 ~ 5830106 (+)
G220920 NA non-coding downstream 351613 5945590 ~ 5946344 (+)
G219803 NA other upstream 536259 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 1212962 4372658 ~ 4393677 (+)
G218981 NA other upstream 2341419 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3522209 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4863588 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1231822 6825895 ~ 6830637 (+)
G221319 NA other downstream 1748064 7342041 ~ 7342546 (+)
G221386 NA other downstream 1815546 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2511666 8209722 ~ 8214696 (+)
G222727 NA other downstream 2748965 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017919 rdh14b coding NC_007131.7 CM002904.2 9421448 ~ 9428021 (-)