CI01000051_06373457_06388474 (INTS7)


Basic Information

Item Value
gene id CI01000051_06373457_06388474
gene name INTS7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6373457 ~ 6388597 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_06373457_06388474.mRNA
CGCGTTCGTTTCTGTCGGAGGCTGCTTACGGCGAGCAGGAGCTGGACGCCAATTCAGCGCTGATGGAGCTTGATAAAGGTTTAAGGTCTTGTAAACTGGGCGAGCAATGTGAAGCCGTGGTCCTTTTCCCTAAACTCTTTCAGAAGTATCCCTTTCCCATCCTCATCAACTCTGCCTTCCTGAAACTGGCAGACATCTTTAGACTTGGGAACAACTTTCTGCGACTCTGTGTGCTGAAGGTCACACAGCTGAGCGAGAAACACCTGGAGAAGATCCTGAATGTTGATGAGTTTGTCAAAAGAGTGTTTTCTGTCATCCATAGCAATGATCCTGTTGCCAGAGCAATAACTCTCAGAGATTTTGCTGCAGGGATTTGCAACAAGATTAGTGAAATGATTCAAGGATTGGACACTCCAGTGGAGCTGAAGCTGAAGTTGATTCCGATGCTGCAGCACATGCACCATGACGCCAGTCTGGCCTCGTGCAGCAGGGAGTTACTCCAGGAGCTGGTGTCCTCCTACCCGTCCACAGCCATGCTCATCGTCACTCTACACACCTTCACCCAGCTGGCCACCTCTTCACTCGTCGATATCCCTGAGCAGATTCGTCTTCTTCTCCAGTACTTGAAGGAGGACCCCAGAAAAGCAGTGAAAAGACTCGCCATTCAGGATCTCAAGCTCCTGGCTAAAAAAGCTCCTCACTTGTGGACCAGGAAGAACATACAGGTGCTGTGCGAGTGCGCTCTCAGCACCCCGTACAACAGTTTGAAGCTGGGAATGCTGTCTGTGCTCTCCACACTATCTAGTACCATCGCTATTAAACACTACTTCAGCCCTAATACAGGTACAAACTCAATCTATATCAAATATGGTAAAAATCATTTTATCAAAAATGCATTTATGCAAGTTTATGCAAAAGATTTCATGAGGTATCTCAACATTTCTCATGAGTTTAACCACCTAATCTCTGTGGATGACGCAGGTGAGGCGTCTCCAGCACCCCGCCACACTGACCTGGTGAAGCTGGCGCAGGAGTGCTGTTACCATAGTAACCTGGCAGTGGCAGCCCATGGAATCACTGTGTTGACCAGTATTGCTGTTTCTTGTCCAGAGAAAGAGGTCATCCAGCTGGAACAAGAAACAGTGATGGGGATGGAGTCTCTCATTCTGCTCTGCAGTCAAGATGACAGTAAAACTGCACAGGCGACACTTAAAACGGCCCTCACCTCTTTGGTGAAGATGTTGAAGAGCTGTCCTCATCTCAGTCAGAGCTCTGTTGATCTCCTGCTGGGGCAGCTGCATTGCGCATGTGACTCTGCACGGGTGCTCATGTGTCAGGCTCTGGCTGCTATTGCCACACAGCAGCCAGTGCTGGCAGAGGGAATGCTGGGAGACCTGCTGGATCTCTTCAGGGTGGCAAGTCACAGAACCTCAGAGAAACAGCAGGAGCTTCTGGTTTCCTTGGCAACAGTATTATTCGTGGCCAGTCAGGCTTCTCTCTCGTCCGAGGTAAAGACTGTGATCAGGCAGCAGTTGGAGAATGTGGCCAATGGTTGGACTGTGTACCGCATTGCCAGACAGGCCTCCCGCATGGGCTGCCACGATTTTTCCAGGGAGTTGTACCAGAGCCTTCGTACCCGCGTTGCCTCAGAACACTTCTACTTCTGGCTGAACAGTTTGATGGAGTTCTCTCAGGCTGAGCAGTGCCTCAGTGGGCTTTCAGATGGAGACTACAGCGCAGCCATGAGCGCCATCTCTGAAGCACTCAAATCCTACCAGAAGGGAATCGCGTCTCTTACGGCCGCCAGTACGCCACTGAGTCCTCTGACGTTCCAGTGTGAGTTTGTGAAGCTGCGTATAGACACTCTTCAGGCGCTGTCCCAGCTCATCTGCACCTGCAACAGTCTGAAGACCAGCCCACCTCCAGCCATCGCCACCACCATCGCTCTGTCCTCAGGCAGCGACCTGCAGCGCTGCGGCCGCATTTCAACACAGATGAAATTATCCATGGATGAATTTAGAAGTCTGGCGGCCCGCTATGCTGACCTGTATCAGTCTTCGTTTGATGCTGACTATGCCACCCTCCGTAATGTTGAATTGTATCCTCTTAAAGAGTTCGGCACACATGGATCAGTTCTGGCAGAGAGCGAGTATGAACTGAGAATGCTGGCTGTGTTCAATCACGTCCTGGAGGAAGTGGAAAACTTAATCAGGAAGCACCCTCCTGTCTCTTACCTGAGATATTTCTTCCAGAAGCTTCAGTCCACCAGCATTAAACTTGCTCTCTCTCCATCTCCTCGTACACCCAATGAGCCAATCCCAGTGCAGAACAACCAGCAGTTGACTTTAAAGGTGGAGGGGGTGGTGCAGCATGGCTCCACTCCGGGACTGTTCCGGAAAATTCAGGCTGTCTGCCTTAAAGTCAGCTCTACTTTACAGACAAAACCAGGATCAGACTTCAAGATTCCTCTTGATTCCAAGACCAATGAGATTGAGCAGAAAGTGGAGCCTCATAATGATTACTTCAGCACACAGTTTCTGCTCAACTTCTCCATCCTGGGCACACACATTGTTACTGTTGAAGCCTCAGTTGTAGACACCAGTGGGATCGAATGGAAGACGGGACCAAAAACCACTGTATCAATAAAGTCTCTGGAAGACCCTTATTCCCAGCAGCTGCGACATCAGTTACAGCAGCAGCAGCAGACCGTGCCTCAGCCGGGACCCCAGAGAAACATCTGTGCCCGCTTCCAGTGACCTCCATCCTCATCAACTGCTTACTGTCTGTATTTTACTGATTTACAGGCTTTCTTATTTGTGTTCTTTAGTGTTTTGTACAAGTGAGTGGGTGAACTACTATCTGGCTTTGTTTGTGGAATA

Function

symbol description
ints7 Acts upstream of or within lens development in camera-type eye. Predicted to be located in chromosome and nucleus. Predicted to be part of integrator complex. Orthologous to human INTS7 (integrator complex subunit 7).

GO:

id name namespace
GO:0016180 snRNA processing biological_process

KEGG:

id description
K13144 INTS7; integrator complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_06373457_06388474.mRNA True 2879 mRNA 0.50 17 6373457 6388597

Neighbor

gene id symbol gene type direction distance location
CI01000051_06315270_06317555 NA coding upstream 54831 6315270 ~ 6318626 (+)
CI01000051_06286985_06304439 KCNK3A, KCNK3 coding upstream 69018 6286985 ~ 6304439 (+)
CI01000051_06167413_06171890 NA coding upstream 200950 6167203 ~ 6172507 (+)
CI01000051_06155906_06164505 EZRB, RDX, EZR coding upstream 208952 6155906 ~ 6164505 (+)
CI01000051_06136031_06140543 RSPH3 coding upstream 232824 6136031 ~ 6140633 (+)
CI01000051_06398882_06401885 NA coding downstream 10285 6398882 ~ 6402536 (+)
CI01000051_06655818_06730954 NA coding downstream 267221 6655818 ~ 6731285 (+)
CI01000051_06825895_06830637 NA coding downstream 437298 6825895 ~ 6830637 (+)
CI01000051_06887510_06888144 NA coding downstream 498561 6887158 ~ 6888179 (+)
CI01000051_06898228_06901582 FAM89A coding downstream 509631 6898228 ~ 6901620 (+)
G221065 NA non-coding upstream 40968 6329977 ~ 6332489 (+)
G221062 NA non-coding upstream 57269 6315970 ~ 6316188 (+)
G221058 NA non-coding upstream 61651 6311335 ~ 6311806 (+)
G221057 NA non-coding upstream 62255 6310952 ~ 6311202 (+)
G221013 NA non-coding upstream 172208 6200333 ~ 6201249 (+)
G221194 NA non-coding downstream 396889 6785486 ~ 6793936 (+)
G221188 NA non-coding downstream 406394 6794991 ~ 6796606 (+)
G221208 NA non-coding downstream 459044 6847641 ~ 6911711 (+)
G221254 NA non-coding downstream 558787 6947384 ~ 6947895 (+)
G219803 NA other upstream 1321424 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 1998127 4372658 ~ 4393677 (+)
G218981 NA other upstream 3126584 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 4307374 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 5648753 637590 ~ 720669 (+)
G221319 NA other downstream 953444 7342041 ~ 7342546 (+)
G221386 NA other downstream 1020926 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 1717046 8209722 ~ 8214696 (+)
G222727 NA other downstream 1954345 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017951 ints7 coding NC_007131.7 CM002904.2 13020489 ~ 13142357 (-)
bowfin (Amia calva) AMCG00004268 ints7 coding CM030121.1 CM030121.1 40811386 ~ 40824981 (+)