CI01000051_06985393_07011299 (CNKSR3)


Basic Information

Item Value
gene id CI01000051_06985393_07011299
gene name CNKSR3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6983354 ~ 7011403 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_06985393_07011299.mRNA
ATTTAAAAAGGGCCGTCTACCCCCCACAAAGAGCCACTTTTTCATACTGCAGTCAGGCAAACAGTGGACAGAAGAGCTCACCTCCCCTGCTTCAGACAAGAGTTTCAGCTAAAAAGCTTTAACTGTGTCTTTTCAGACTTGGTTTGCACAGTACTGTAAGTCTTCAGCCTTCCAGTGAAATGCATTCAAATGAGTCAAACAAGGGTGAATCTTACCAAAACATGTCCAGGTCATTTCTATCCTAGATAAAAAAAAAAAGAATATCTAGAAAATATTCATAAAATGCATAAAGAAAATGAAGCCTATGTTGAAAAAAATGGTGCAGGATTTAGTTTGAAACAATTTTCACTCAGAAATTGCTATAAAACAAATAACTACAAAGAAATGGCAAGTAATACACTGAATTAAACGTGAAGTATAAAAAGACTGAAATAGTATTTTCTTGTAAAACGTATTTCAATAATCTTTATTTACAACTTTGAAAAATCTTTTTTTACATGATAATTTCTCAGGATCATTATGCATTGTGACTAGAGCTGTCAATCAAACTTTAATCAGATTAATTACATGAATTAAACATGTAATTAATGAAGTCACAATTAAATTAAACATGAAGGTGATATTTCAAGTATGAATTGCTCAGTTGGTAAGAATATTCTTTATGCAATTTTCGCACAGGTCATTGGGCATGATTAATTGCATTTTTTTTTAAATTACTTTGTATATTTTGCTTTTGGATTTTCTTATTCTCATTATTTTCAGCGATGATTCTAATGACTTCAATACAATTTAGGCCTATACTTCATTAAAATCAGCATACAGGCAAAACAACATACACAATGATGAATACTTTACAATTTAAATCTTATTTTTGGGGTTACAGTTATTAGTGTGAATTTAGGGAGGAAATGTAGTTAACTGTCATTAAAATAATGAAATAATAATTTTATTTATGTGTTTATGTATATATTTAAAGCTGCAGTCCGTAAGTTTTGCCTCTTTGTCGCCATCTCTGTTTGAAACCTGCAATTGCAGTTATTTGCGGAAATTATCATTTTTACGTGGGTTGTGCATTGGCACGGCTCCTCAGCACAGATGAATCTAATGTTTGCTGTCAGTCACTCACCACCACATCGGTGTGGATACTGTACTTCAGAATCACAGATTCTATGACCAAAATAAGAATTTTCACTTGAAAATGTCATCTGAAGGAGTAAGTAACAAATCTGCCACTTTTGTTCTGACCAACGGAGAAAAAAAAGCATAAATCGTGCTGCCAATGGTGATTAAATCTAACTATCGCTTAGCTCGAATCACGCCAAACCATGCAAATGATTATTATTGTTATACTTTGTTCTCAAATGGTTAATGCTAACAACATCAGCATTGCGTGACTATGTGTATTTAGTGTGTATTAGCGTTACCTGTAGATTTCAATTTCTGTAGCCACTCTGCAGTCCGAAGTCTTTTGCTTTAGACTACGGTGAATCTCCAGTTGTCACTGATGACTGTCATTTGGATCTTTCTGGATTACACTCCGCCATCAAAATTATAAGTTTAATTATTCCAGTTGCTGTGAGAAAATGCTATAAATAATCCTATAAATATAGCCTACTAGCTGGGACTCCTTCTTTCTGTTTACAGACGTGACGTAATGACATTACAGACGTGACGTAAAAACATTATTACAAGCTTACCGTTGTGAATCGGGCTAAGGTAAGGAGATAGTTTTGAACACTGGCTGGTTATGTACTTGCTCAAAAATTGACTTTGGATAATTTTTAACCAAAAAAAAAAAAAGTTACAGACAGCAGCTTTAATTATTATATTTGTCTTATTTTATAAAATGTTCTTATATTTTTTATGTACGTAGAATTTTATTATATAACTTTTAGATTAAATATGGCCCAGACTTGGTTTTGACAGGTTTGTGATATTCACTCATTCATGCCAACCCTTACATATGTTGCTGTGCCGTCTGTCAGACACAACTCATGTGCTGATTGTGTGTGTTGTGCGTTTGTGGAAGTAATACCAGCATGGCTGCATTTTCTCACACACATGGAGTCCAGCTACAGGACAGTGGGCTGGACGACAGTCTCCAGCAGTATGTTGCTAACTTTGAGAGAGAGAAGATAGATGGAGAGCAGCTTCTGAAGATTTCGCATCAGGATCTGGAGGAGCTGGCGGTGACCCGCGTCGGCCATCAGGAGCTGATTCTGGAGGCTGTGGATCTCCTCTGTGCATTGAACTGTGGTGTGGAGACTGATAACTTGAAGACTCTGTTAGGTCAGATGCGAGCAGCATCCAATAACTTGCACAACTGTGCATCAGAGCGCAGGAAAAATCCATCTTATGATGGAGGAAGTCCAAACAAACCACCTAATGTGTTCCTCACCGCTGTGGTGGAGCTGATAGGGGCTGCCAAGGGCATGCTGGCCTGGCTTGACAGGACTCCCCTCACAGGAATCAGTGATTTCGCCTCAACGAAGAACAAGATCATTCAGCTCTGTCTGGAATTGACCACAACTGTCCAGAAGGACTGTACAGTGTTTGAAATGGAGGAGAAGATATTAGAAGTGGCACGGGTTTTGACTGGCATTTGTGACTCCACCATGAGAATGACCTCTGACCCCTTGAAGACTCACATGACCTGTTTGGAGGAAGTCCCCATCACCAATATCAAACCAGGCGAGGGACTGGGAATGTACATCAAATCCACTTACGATGGGCTGCACGTCATCACCGGAACCACAGAAAATTCTCCAGCAGACAGAACTCAGCGGATTCATGCAGGTGATGAGGTGATACAAGTCAACAGACAAACAGTGGTGGGCTGGCAGTTGAAGAATCTAGTGGAAAAGCTCAGGGAAGATCCTCAGAATGTGACACTGACGGTGAAGAAAAGGCCATCAGGTACCTGTGGCTTCACACCGGCACCACTGAAGAACATGCGCTGGAGACCCCCTGTCGTCCAGAGCCCATCCTATGTGCCTGCTGCCCAGTCATCCAGAAATCCTGTGCAAATCTCTGTCAAGCGGCCAGAGAAACCTGCAATTTTAGATCTCTATATCCCTCCTCCTCCTTCCATGCCATACAGCCCACGAGATGCAGAGACAAGTGAATGTGCAGGTGTGAAGATGAGACCAAAAGGTTCAGAGTCGCCCAACTCATCTCTGGATTTAGCTAGTAGACGGCGTTCAAATATCAGCGACTACAACAGCAAACCTAGTGTAAATCCAGCTGAGGTCGTCATCCCACAAGCACGACTGAGACAGCGGACTCCATCTCGAGGAAAGCCACGTCCCATGTCCATGCCAGTAGACACTTGCCTGGGCGTGTCGGACTCTCCCTCTAGACCCTGGGCTCTTGGAAGGAAAGGTGAGGTTTTGCACAGGTATCTGAGTAACGAACAGATCCCCACCATCTCAGAAGAGTCGCCCTGTTACCCACTGCCCTACCGGCCCACAGGCGAACGGCAACTCGTCCGAGGGGTCGACCACATCCGCGGCAGCCAGTGTTTCATCAATGCAGACCTACACGACAGCGCCACCATACCCTACCAGGAAGCTGTGGCACGGAAGCCAGCAACAAAATCTTCCAAGAGACCACCCTCAGAACCCTCACTGCTCAGCAGCTGGATCGCTCGACTCAAGCTGCTCACACACTGAATGCCGCTGGTTGTCTGCCATCCGTGTGCAGTATTATCATTTAAAATCTGGAATGTTCCACAGGATCTGAGACCAGGATCTGTGGAAATTCAGTTTGGCCAGTA

Function

symbol description
cnksr3 Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in cytoplasm and membrane. Orthologous to human CNKSR3 (CNKSR family member 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_06985393_07011299.mRNA True 3775 mRNA 0.42 13 6983354 7011403

Neighbor

gene id symbol gene type direction distance location
CI01000051_06970612_06971675 NA coding upstream 11512 6970422 ~ 6971842 (+)
CI01000051_06948569_06952962 NA coding upstream 29258 6948569 ~ 6954096 (+)
CI01000051_06917282_06944243 TTC13 coding upstream 39087 6917282 ~ 6944267 (+)
CI01000051_06898228_06901582 FAM89A coding upstream 81734 6898228 ~ 6901620 (+)
CI01000051_06887510_06888144 NA coding upstream 95175 6887158 ~ 6888179 (+)
CI01000051_07015896_07020569 NA coding downstream 3980 7015383 ~ 7020614 (+)
CI01000051_07081085_07109551 TIAM2 coding downstream 69682 7081085 ~ 7109606 (+)
CI01000051_07125875_07127476 CLDN20 coding downstream 114472 7125875 ~ 7127847 (+)
CI01000051_07170752_07194524 NA coding downstream 159349 7170752 ~ 7194524 (+)
CI01000051_07215332_07217167 NA coding downstream 203929 7215332 ~ 7217708 (+)
G221254 NA non-coding upstream 35459 6947384 ~ 6947895 (+)
G221208 NA non-coding upstream 71643 6847641 ~ 6911711 (+)
G221188 NA non-coding upstream 186748 6794991 ~ 6796606 (+)
G221194 NA non-coding upstream 189418 6785486 ~ 6793936 (+)
CI01000051_06655818_06730954 NA non-coding upstream 252069 6655818 ~ 6731285 (+)
G221256 NA non-coding downstream 32260 7043663 ~ 7152095 (+)
G221280 NA non-coding downstream 149763 7161166 ~ 7161367 (+)
G221283 NA non-coding downstream 195968 7207371 ~ 7207573 (+)
G221351 NA non-coding downstream 211314 7222717 ~ 7222987 (+)
CI01000051_06825895_06830637 NA other upstream 150286 6825895 ~ 6830637 (+)
G219803 NA other upstream 1931321 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 2608024 4372658 ~ 4393677 (+)
G218981 NA other upstream 3736481 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 4917271 2060534 ~ 2062355 (+)
G221319 NA other downstream 330638 7342041 ~ 7342546 (+)
G221386 NA other downstream 398120 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 1094240 8209722 ~ 8214696 (+)
G222727 NA other downstream 1331539 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017858 cnksr3 coding NC_007131.7 CM002904.2 3828237 ~ 3911546 (-)