CI01000051_07081085_07109551 (TIAM2)


Basic Information

Item Value
gene id CI01000051_07081085_07109551
gene name TIAM2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7081085 ~ 7109606 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_07081085_07109551.mRNA
GACACACATCCCACAATACCCTGGTTCAGCCCTCTGCAGCCCGGCGTCTGGAACCGACAAAGCACATTGGCTGCTTCTGTGTTCTGTGTCTTAAAAAGCCGCAGTGTTCGAAGCATAACATCACACCGCCTGCTGATGAGCGATGGAGAGAGAGGGGAACAGCTGTGATCAGAATGGGAAATACAGATAGTCAGTACAGCAGTTTCATCATCCCTGGTAAGGGAAAATCTAGCTCCCTGAAGCTTCACACCTCTAAAGAGGAGGTACTGTCCCCGCACTCTTGGTGGAGGAACTCTGAGAGCACATCTGGATACAAGGCCAAAAATGGTTTTTCACCACACAAGAACAGCCAACCTTACATCTCCCGCCATTATGACTGCATTAAGGGGAGATCTAGTGATAAAATATGTGCAGAGAACCACCAAGACGTTTTATTCCAGGGAAATGGTTTCTTTGTAGGCTGCAGACAACAGACTGGAGGCCTCCAGGCTCCTATGAGGAGCCCCAATTCTGAGCTTAAAGACAGTAAGAGCAGTCCCAAAGTTCTTTTTCGTGAGGGTGGAAGTCTGAGGGTAGAGTTTACTAATGCACGGAGGGAGCCGGATGTTGACCTGTCACTGGGCAGTTGTCTCAGTGGACCTGTTGATGCTACCCAAAGGGCCAGTAATGGGAGCTCTCTTAGTTCTGAGGGCTCATGGTATGACTCACCCTGGGGGAATGGGACAGATCTGTGTGACAACGTCTTCACCACCAGCCAGCCTTCAGACAACAGTAGTGGATATACCACACTCTCATCCACACGTACAGTGGACCTTGGATGTATTAGTGGTTACACTACAGAGCAGTCTGAGAACCATATGGGTAGCCTCACCTGCCAAACTACAGCTCATGGCAGTCAGTACACAAGCAGTGATTCCTATAGTAATGGGTACAATACCAACCACGCTGAGGGGGACAGTGGTATTGGAGACTCTGTGCTCCTTCATTTGGAACATAATGGATTATCTGACCTATACACAAATCCCAACATGACTGTGCCATTCCCTACCGTGGGCATCCTAGCGGCAGATCAACTAGAGGACACTCCTCACCTCCAAACCTCACTGACCTCCTCCCTGGATGCGAACTCCCAAGACGAGAGTCAGGAAACCCAGCATTACACCTCACATACCCTACCATGCAGAAAAGCAGTTCCTGATGGGAACACGCGGAAGGACTCGCTCAAGAGTCGCATCCGCCGCCTCAGCGATTGGACGGGAAGTCTAAGTAGGAAGAAGCGGAGGCTGCAGGAACCTCAGGAACAAAGTACTGTGGACTTTACAGAGGTTTTTAACTGTGGAGCTGGGGGCACGCTGGAGGAATCCAGACCATTTTGGAATCCCATGTCCTCCCAGACAAAGTTGGACTGCTCTGGGTCCTTAACGGGCCCATTTGGGCATCAGAACCAGGGTGCAGCCCTGAGGCAGAACATCTACGAGAACTTTATGCAGGGCCTGGAGACTGGCAGTAGCAGTGGAACTGCTGATGGACCCCAGGTCTGGGAATGTGAAGGGGAGAGCAGCAGTGGCTCAATGGGCTCCTTGGAGCAAATGGACTTCCTGTTTGAGAAGGAGCAAGGTGTTGTGAGGAGAGCTGGTTGGCTGGCTTTTAAGCCCCTCATTACCCTTCACAAGGACCGCAAACTGGAGCTGGTAGCAAGACGCAAATGGAGGCAGTATTGGGTCACGCTCAAAGGCTGTACACTTTTGTTGGGTGAATCCAATGGAAAGACCTCCCCAGAGCAGGAATGCACACCACATTATGCAGTGCTTGCTGAGGACAGTATTGTGCAGGCAGTTCCTGAGCATCCCAAGAAAGAGAATGTCTTCTGCCTCAGCAATGCCTATGGAGACGTCTATCTTTTTCAGGCTGCAAACCAAACAGACCTGGAGAATTGGGTGACAGCCATTCATTCTGCCAGTGCATCAAATTTAGCTAAGCGTCAGGGGAAGGAAGACACTCTACGTTTGCTAAAGAGTCAAAGCAGAGCTCTCCTGCAGAAGATCGACATGGATGGCAAAATGAAGAAGATGGCAGAGCTGCAGCTGTCCGTCATCAGTGACCAGAAGAACAGGAAGGCTATTGAGAGCCAGATCCTGCAATGGGAACAGAACCTAGAGAAGTTTAACCTAGAGCTGTTCCGCATGCGCTGTTACCTGGCTAGCCTGCAGGGCACAGAGCTGCCCAATCCAAAAAGCCTGCTAGCCACTGCTGGACGCCCATCTAAAACGATGCTAAGTCGTCTGGGAATTTTCTCTGTCTCATCCTTTCATGCGCTGATATGCACTCGTGATGAGGCCACCCTGAAGAGACGATCTCGCTCTCATCCTCGAGGTATGCGGAACAAACGAGGACTACTGTTTTCTTCACAGAAGGGATTGGACAGTTTGACCAAACGCAACTGTGAAAAGAGACAGTCCCTGTCCCAGATATTTGAAGGATATTCCTCTGGATCATTTGGTCAGCCATCCACACAAAGCAGCTCAGAGCTTTTGCACTGTCAAATCCCCATATTAAGGCTGCTGCTGAAGGACAATAGAATTACACTGAAAGATCCTCCCCCATTTCGGGTGATTTCTCCACCCCCTGATCTGTTTGAACTGCATAATGTCAACAGATCAGCAGGTTGTTGTGACAGCTGTAAGCTGGACATCTTTACCAAACTGCATTTAACAGCGCCACCTGAAGGTCATCCATGGGACTGCAGCCTGGAAAGCCGTGCTTATGTACACATGCCGGACAGCCAGGTCATCAGTGTGCCAGTCAAACAGGACTCTCTGGTTTCTGATGTTCTCTCATTGGCGTGCAAGGTAAAGCAACTTGACCCGGCTCTGCATTGCCTGCACATGAGGAGACATTTAGGACAAGATGTGGAGAGAAGTACTCCATTGCCCACAGACCTGCTGAGGACCCTGGTCTACGATGAACTGGAAGTTTGGCTTCTTAATGTGTTCACCTTAAACATGTCCCGTCCAGACATAACCGTAGACTTTGGTTTTGCGGTCACAGGCCACGTGGATGGTGCCAGGAAGAGTCATGTCTATGTGAGTGAGGTGAATCCTGAAGGCCTGGCATTTATTGAAGGTCTGAGAGCAGGAGATGAGATCTTGACTCTTAATGGCGTGAGTGTGGCCACTCTCGACCTCGGCCTCATGCAGAGCTTCTTCAGCCAACAAGATCTCCATCTTGTCCTCAGACGTGAGGATAACAGCTCAGACGACCAGTGCTCCATTTGGCCAGACTGTGACCCCAGTGAACCTGATCAACCTCAGCCTCCTCAGGGCGACATCATTCGCCCGGAGCAGTTGACCACCGATCCATCTCAAGAGCAGGAATTTCCCGAGAGTTCCGTGGCGCCTGCTTTGGAGGAGGTGAACGATAAGGCCGAGCGGGGCGGAAAGAACCCAGAGACGGTGTGTAATCTCTACCAGACGTTCCCTGAAGGATCCATTCTCATGCCAGAGGGCCACAGGAACCCTTACTCCACTGAAAATGCCCTTGCCAGATCCTCTCCCCGTCACATGTCCGTCACTGAGCGCCTGCGCATGGTTATTCAAGAGCTGGTGGACACAGAGAAATCTTATGTCAAGGACCTTGGATCTTTGTTTGAGATCTATCTGAAGCCATTACAAAGAGAAACATTCCTTAGTCATGATGAGATGGAGTCTCTGTTTGGCAGCCTGCCAGAGATGCTGAACTTCCAGAGGGTTTTCCTACAAACCCTAGAGGAGAGGACAACTTCCTCACCGGACTACCATGCACTGGAGACTCCAGAGAAACTTAAGAAACTCCTCTTCTCCCTCGGCGGATCTTTCTTATACTATGCAGATCACTTTAAGCTTTACAGCGGCTTCTGTGCCAATCACATTAAGGTGCAGAAAGTTCTCGAAAGAGCAAAAACAGACCGGGCGTTCAAAGAGTTCCTGGAGGCGAGAAACCCCACCAAACAGCACTCGTCCACCCTGGAGTCGTACCTCATTAAACCTGTGCAGAGGGTTCTGAAGTACCCGCTGCTGCTGAGGGAGCTGGTGTCTCTCACTGACCCCAAGAGCGACGAGCGCAACCACCTCACAGAGGCGTTAAAGGCCATGGAAAAGGTGGCCAGTCACATAAATGAGATGCAGAAGATCTATGAGGACTATGGCACAGTGTTTGACCAACTAGTGGCAGAGCAGAGTGGCCCTGAGAAGGAGGTCACTGAGATCTCCATGGGAGAGTTCATCATTCACAGCTCGGCACTCTGGCAAAACCCTCTTCCCTCTTTGGGCCGCATGAGAAAAGACCCTGAACTCACCCTCTTCCTCTTCAAGAGAGCGCTCATTTTGGTGTATCGGGAAAGCAAGCTAAAGAAAAGAATGGTCCGACCTGGAAATTCAGCAGGGTCAGAGAACCCTTGTGTTTGGGAGGTTGTTCACACCAAGTCTGAAGTGGAGGGACGACCAGAGATGTTCTTTCAGCTCTGCAGCAGGTAACTGATATTGAAAGTCAAATAAATAATAATAATAATAATAATAATAATAAGAGCAA

Function

symbol description
tiam2 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; positive regulation of axonogenesis; and small GTPase mediated signal transduction. Located in extracellular exosome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_07081085_07109551.mRNA True 4566 mRNA 0.50 26 7081085 7109606

Neighbor

gene id symbol gene type direction distance location
CI01000051_07015896_07020569 NA coding upstream 60471 7015383 ~ 7020614 (+)
CI01000051_06985393_07011299 CNKSR3 coding upstream 69682 6983354 ~ 7011403 (+)
CI01000051_06970612_06971675 NA coding upstream 109243 6970422 ~ 6971842 (+)
CI01000051_06948569_06952962 NA coding upstream 126989 6948569 ~ 6954096 (+)
CI01000051_06917282_06944243 TTC13 coding upstream 136818 6917282 ~ 6944267 (+)
CI01000051_07125875_07127476 CLDN20 coding downstream 16269 7125875 ~ 7127847 (+)
CI01000051_07170752_07194524 NA coding downstream 61146 7170752 ~ 7194524 (+)
CI01000051_07215332_07217167 NA coding downstream 105726 7215332 ~ 7217708 (+)
CI01000051_07253002_07255432 PTGFR coding downstream 142595 7252201 ~ 7255620 (+)
CI01000051_07259968_07261598 BT3L4, BTF3L4 coding downstream 150112 7259718 ~ 7261731 (+)
G221254 NA non-coding upstream 133190 6947384 ~ 6947895 (+)
G221208 NA non-coding upstream 169374 6847641 ~ 6911711 (+)
G221188 NA non-coding upstream 284479 6794991 ~ 6796606 (+)
G221194 NA non-coding upstream 287149 6785486 ~ 6793936 (+)
CI01000051_06655818_06730954 NA non-coding upstream 349800 6655818 ~ 6731285 (+)
G221280 NA non-coding downstream 51560 7161166 ~ 7161367 (+)
G221283 NA non-coding downstream 97765 7207371 ~ 7207573 (+)
G221351 NA non-coding downstream 113111 7222717 ~ 7222987 (+)
G221353 NA non-coding downstream 115284 7224890 ~ 7225167 (+)
CI01000051_06825895_06830637 NA other upstream 248017 6825895 ~ 6830637 (+)
G219803 NA other upstream 2029052 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 2705755 4372658 ~ 4393677 (+)
G218981 NA other upstream 3834212 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 5015002 2060534 ~ 2062355 (+)
G221319 NA other downstream 232435 7342041 ~ 7342546 (+)
G221386 NA other downstream 299917 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 996037 8209722 ~ 8214696 (+)
G222727 NA other downstream 1233336 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017107 CABZ01067980.1 non-coding NC_007131.7 CM002904.2 4304457 ~ 4307735 (+)