CI01000051_07253002_07255432 (PTGFR)


Basic Information

Item Value
gene id CI01000051_07253002_07255432
gene name PTGFR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7252201 ~ 7255620 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_07253002_07255432.mRNA
TTATATATAGGCTACGTTAATTATAGCTATATTTTAAGCAGAGCATTTTATTTTTATTACTCAATTACGGCTAAACTGTACATGTAACAACAGCACAATAGTTGACTAAATGTTGTACACATGTTATAAATTAATCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTAGTTTTTAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTTAGTTTTTAAGATAGATAGATAGATAGATAGATTTAGTTTTTAAGATATATAGATAGATTTAGTTTTTAAGATAAATAGATAGATAGATAGAGAGATTTAGTTTTTAAGATAGATAGATAGATAGATAGATTTAGTTTTTAAGATAGATAGATTGATAGATAGATAGATTGATTGATAGATTTAGTTTTTAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACTGACTGACTGATTGATTGACTGATTGATTGATTGATTGATTTGGTCCTAGATCATATGTAGCCTACTATAGCTTAAAAATGTTTGCATACATGCTGTTTCAAGTAAACAACATATATTTAATAAAACAAACAAAAAGTTATACATATTTGTTTAGTTCTGATTTTGGGATCTGGCTGCACTGAGAACAAAATGAAGGTATTAAAATTGCACACATTCGTTTTTCTAAATTACTGTAAATGAGGGCAGTAGACTTATCTTGAGTTTTGTTTAATATAAATTTTACATATTAATATAAATCACTTGAACTAATAATCTGTTTGTTTGCAGTGCGAAGTGCCGATCATGTCTTATAATGGGTCAGCTAATGCTGGATGTTTGGTGTCGAGAGATGTGTGTAATGGGAGCTGTACCAAAAGGGAAGTGTCTGTGACCTCGACTGCCATCTCAATGACAGTGGGCATTGTTTCCAACACTCTGGCTCTCTTTATCTTGATCAAAGCCTACCACAGGTTCAGATTTAAATCTAAAGCAGCCTTCCTCCTGTTTGCTAGTGGTCTGGTGGTGACTGACTTCTTGGGGCACCTGATCAATGGTTCTCTGGCTCTCTATGTTTACGCCTCACAGAAGAAATGGGAAACATTCGACCCTCACAAGTCTCTGTGTGACTTTTTTGGAGTTTGTATGGCTTTCTTCGGTTTGACTCCTCTGCTGCTCGGGAGCTTGATGGCAGTGGAGCGCTGTATCGGAGTGACCCGTCCTCTCTTCCACACCACTGCGCTGGGGTCCCATCATGTCAAGAGTCTGCTGGGTCTGACCTGGCTCCTGGGTCTGCTGGTGGCCCTGCTGCCCATCCTGTTTCAGCGGTCGTACCAGGTACAGCATTCACGAAGCTGGTGTTTCTTCCGCCTGCAGGGGCCGCGTGACTGGGTGGATGTCCTTCTGTCGATATTGTTCTCTGTGTTGGGTTTGCTGGCTCTCCTTCTCTCACTAGTGTGCAATACCATGACTTTCCTCACTCTCCTGCGAAGTAGGGTACAACTTGACCGTGATCATAATCGACATTGTCGTAACACATCACACCATTCTGAGATGGTCTGCCAGCTTTTGGCAATCATGCTGGTTTCCTGTGTGTGCTGGGGGCCAATTTTGGTAACAGGCATCGTCTTCAGCATACAGGATCATGGTGAAGATCAGGCGTCTTACACTCATATGCTGTTGGTTGTACGCATGGCAACATGGAACCAGATCCTCGATCCATGGGTGTACATCCTCCTGCGCAAAGCGGTTTTGAGGAGACTTTTTCTTGTGGCATTGAGACTTTGTAGTCCTCACTTGAAATTTAAACTCCAGTGGCAGGCCAGCACTCTGGGGAGCTCCACTATAGAGGCCAAGAGCAGACCCGACTTCATCTGCCTGGATGGACCTTTTCTACCAGACGCTGTCATCCAATCAGCTCACCTCCCCTGAGCTGAAATGGGGGATATGAGACCTTGATTCACAGATATTGGATCATTACAGTGGAAAAGACTGTTTCTGAGATCCATGCGATGTCTCTTGTTGAGGAAATTTGCATTCATTTAAAAGTTCAGTCTAAGGTCAATCACAGAGTTGTTCTCATTAAGTACAATGTGTCAGAAAAGTTCAAATAGGGACCA

Function

symbol description
ptgfr Enables prostaglandin F receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human PTGFR (prostaglandin F receptor).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04262 PTGFR; prostaglandin F receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_07253002_07255432.mRNA True 2114 mRNA 0.41 2 7252201 7255620

Neighbor

gene id symbol gene type direction distance location
CI01000051_07215332_07217167 NA coding upstream 34493 7215332 ~ 7217708 (+)
CI01000051_07170752_07194524 NA coding upstream 57677 7170752 ~ 7194524 (+)
CI01000051_07125875_07127476 CLDN20 coding upstream 124354 7125875 ~ 7127847 (+)
CI01000051_07081085_07109551 TIAM2 coding upstream 142595 7081085 ~ 7109606 (+)
CI01000051_07015896_07020569 NA coding upstream 231587 7015383 ~ 7020614 (+)
CI01000051_07259968_07261598 BT3L4, BTF3L4 coding downstream 4098 7259718 ~ 7261731 (+)
CI01000051_07267084_07283654 ZFYVE9B coding downstream 11391 7267011 ~ 7284015 (+)
CI01000051_07287140_07287867 NA coding downstream 31520 7287140 ~ 7288035 (+)
CI01000051_07337005_07340657 MOB3C, MOB3C.S, MOBKL2C coding downstream 81233 7336853 ~ 7340692 (+)
CI01000051_07345863_07353841 MKNK1 coding downstream 90243 7345863 ~ 7355120 (+)
G221360 NA non-coding upstream 3703 7248170 ~ 7248498 (+)
G221353 NA non-coding upstream 27034 7224890 ~ 7225167 (+)
G221351 NA non-coding upstream 29214 7222717 ~ 7222987 (+)
G221283 NA non-coding upstream 44628 7207371 ~ 7207573 (+)
G221316 NA non-coding downstream 29367 7284987 ~ 7285294 (+)
G221365 NA non-coding downstream 29876 7285496 ~ 7285769 (+)
G221347 NA non-coding downstream 30767 7286387 ~ 7286655 (+)
G221311 NA non-coding downstream 36619 7292239 ~ 7293753 (+)
G221378 NA non-coding downstream 76037 7331657 ~ 7331868 (+)
CI01000051_06825895_06830637 NA other upstream 419133 6825895 ~ 6830637 (+)
G219803 NA other upstream 2200168 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 2876871 4372658 ~ 4393677 (+)
G218981 NA other upstream 4005328 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 5186118 2060534 ~ 2062355 (+)
G221319 NA other downstream 86421 7342041 ~ 7342546 (+)
G221386 NA other downstream 153903 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 850023 8209722 ~ 8214696 (+)
G222727 NA other downstream 1087322 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003327 ptgfr coding NC_007122.7 CM002895.2 13032483 ~ 13038233 (+)