CI01000051_07367270_07370738 (ATP5B)


Basic Information

Item Value
gene id CI01000051_07367270_07370738
gene name ATP5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7366852 ~ 7370878 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_07367270_07370738.mRNA
CTATATATAAGCTCGTGAGCCTCTGCCCCATTCCACCTTCAGCCATTTTAACAATGTTGGGAGCTGTGGGACGCTGCTGCACTGGGGCTTTGCAAGCTCTCAAGCCCGGGGTGACCCCCCTGAAGGCCCTCAACGGAGCTCCAGCAGCACTGTTTTCTCGTAAGTAGAAATTATTGGTTTTTAGAATAGTTAGTTTTAACGCAGCTCTTCTGACAGCAAACGTCTCCGCCAGCGCGAGACTGCTAAATGGCAGCATGCGGACAGCAAGTGCAGGCCGCAAAGTTTTAACTGGAAGAGTTTCAGTGATTGCTTTCGCCTGATGCACTACATGTATGTTGATTTGTGGTGGAAATATGCTGCCATAATGGAATACTCCATTTAATGACAACAACTAACTCTGTTTTGTAAGAAAACCGGAATGACCTTTATGTGTCATGGAGAGGAGGCTCGCGCTGCTAGCTGTGTTCGCAGCTCGCGAGGCAGGGATTATGCTGCTCCTGCCGCAGCTGCTGCCGCCGCCAGCGGGCGTATCGTTGCGGTCATCGGTGCCGTAGTGGACGTCCAGTTTGACGAGGGCTTGCCCCCAATTCTCAATGCCCTGGAAGTAGCCGGCCGTGACTCCAGGCTAGTCCTGGAGGTAGCTCAGCATCTGGGGGAGAGCACCGTCCGTACCATTGCTATGGATGGTACTGAGGGACTGGTGCGTGGTCAGAAGGTTCTTGACACTGGTGCCCCCATCAGAATCCCTGTGGGACCTGAGACGCTTGGCAGGATCATGAATGTCATTGGTGAGCCCATTGACGAAAGAGGACCAATTACCACAAAACAGACTGCCCCAATCCATGCCGAGGCCCCAGAATTCACAGACATGAGTGTTGAGCAGGAGATTCTGGTCACAGGAATCAAGGTCGTAGACCTGCTGGCCCCCTATGCCAAGGGTGGCAAGATTGGTCTTTTCGGTGGTGCTGGTGTGGGAAAGACTGTATTGATTATGGAGCTGATCAACAATGTGGCCAAGGCTCATGGTGGTTACTCCGTGTTTGCTGGCGTGGGAGAGAGAACCCGTGAGGGAAACGATCTCTACCATGAGATGATTGAGTCTGGTGTCATTAACCTGAAGGACACCACCTCAAAGGTGGCGCTGGTGTATGGACAGATGAACGAGCCCCCAGGTGCCCGTGCCCGTGTGGCTCTGACTGGACTGACCGTTGCTGAGTATTTCCGTGACCAGGAGGGCCAGGATGTGTTGCTCTTCATTGACAACATTTTCCGCTTTACCCAGGCTGGATCAGAGGTGTCTGCCCTGCTGGGCCGTATCCCCTCTGCTGTGGGTTATCAGCCAACTCTGGCCACTGACATGGGTACCATGCAGGAAAGAATCACCACAACCAAGAAGGGTTCAATCACATCTGTGCAGGCCATCTATGTGCCTGCTGATGACTTGACTGATCCTGCCCCTGCCACCACTTTCGCTCACTTGGACGCCACCACTGTGTTGTCCCGTGCCATTGCTGAGCTGGGCATCTACCCTGCCGTGGACCCACTTGACTCCACCTCCCGTATCATGGACCCCAACATTGTGGGATCTGAGCATTATGATGTAGCCCGTGGTGTCCAGAAGATCCTCCAGGACTACAAGTCCCTGCAGGATATCATTGCTATTCTGGGTATGGATGAGTTGTCTGAGGAGGATAAGCTCACAGTGGCTCGTGCACGTAAGATCCAGAGGTTCCTGTCTCAGCCCTTCCAGGTCGCTGAGGTCTTCACTGGACACATGGGCAAGCTGGTGCCCCTGAAAGAGACCATCAAGGGCTTCAAGGCCATTCTGGCTGGTGAGTATGACGCTTTGCCCGAGCAGGCCTTTTACATGGTGGGACCCATTGAGGAGGTCGTCCAGAAGGCAGAAAAACTGGCTGAGGAGCATTCGTAAACGAGTCTGTTTAAATGTGTCAGGGCGGGTTGAATGAAAAGGAGGAGCACTTGGTTTGTAATGTCACATTCAAAAACAAATTGTATCTTTATCGCTGGTCATTCTGAAGTTCTATTTAATGTTTCCAATTAATGGTGGAA

Function

symbol description
atp5b Predicted to enable several functions, including adenyl ribonucleotide binding activity; angiostatin binding activity; and proton-transporting ATPase activity, rotational mechanism. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Acts upstream of or within cellular response to interleukin-7; lipid metabolic process; and negative regulation of cell adhesion involved in substrate-bound cell migration. Located in mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; eye; heart; and integumental system. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta).

GO:

id name namespace
GO:0030228 lipoprotein particle receptor activity molecular_function

KEGG:

id description
K02133 ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_07367270_07370738.mRNA True 2070 mRNA 0.52 10 7366852 7370878

Neighbor

gene id symbol gene type direction distance location
CI01000051_07345863_07353841 MKNK1 coding upstream 11732 7345863 ~ 7355120 (+)
CI01000051_07337005_07340657 MOB3C, MOB3C.S, MOBKL2C coding upstream 26160 7336853 ~ 7340692 (+)
CI01000051_07287140_07287867 NA coding upstream 78817 7287140 ~ 7288035 (+)
CI01000051_07267084_07283654 ZFYVE9B coding upstream 82837 7267011 ~ 7284015 (+)
CI01000051_07259968_07261598 BT3L4, BTF3L4 coding upstream 105121 7259718 ~ 7261731 (+)
CI01000051_07378590_07389158 ABCB11B, ABCB11 coding downstream 7712 7378590 ~ 7389570 (+)
CI01000051_07391277_07399712 ABCB11B, ABCB11 coding downstream 19756 7390634 ~ 7399786 (+)
CI01000051_07470914_07489207 LRP1AB, LRP1 coding downstream 100036 7470914 ~ 7489242 (+)
CI01000051_07507549_07530087 HOMER3 coding downstream 136671 7507549 ~ 7530087 (+)
CI01000051_07534938_07540104 NA coding downstream 161761 7532639 ~ 7540418 (+)
G221378 NA non-coding upstream 34984 7331657 ~ 7331868 (+)
G221311 NA non-coding upstream 73099 7292239 ~ 7293753 (+)
G221347 NA non-coding upstream 80197 7286387 ~ 7286655 (+)
G221365 NA non-coding upstream 81083 7285496 ~ 7285769 (+)
G221316 NA non-coding upstream 81558 7284987 ~ 7285294 (+)
G221385 NA non-coding downstream 2505 7373383 ~ 7373734 (+)
G221393 NA non-coding downstream 5095 7375973 ~ 7376205 (+)
G221386 NA non-coding downstream 30297 7401175 ~ 7413007 (+)
G221336 NA non-coding downstream 52045 7422923 ~ 7425419 (+)
G221406 NA non-coding downstream 79601 7450479 ~ 7450890 (+)
G221319 NA other upstream 24306 7342041 ~ 7342546 (+)
CI01000051_06825895_06830637 NA other upstream 533784 6825895 ~ 6830637 (+)
G219803 NA other upstream 2314819 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 2991522 4372658 ~ 4393677 (+)
G218981 NA other upstream 4119979 3245443 ~ 3246873 (+)
CI01000051_08211233_08214513 NA other downstream 734765 8209722 ~ 8214696 (+)
G222727 NA other downstream 972064 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003333 atp5f1b coding NC_007122.7 CM002895.2 13207898 ~ 13213059 (+)
bowfin (Amia calva) AMCG00000991 atp5b,LOC102199207 coding CM030137.1 CM030137.1 11741361 ~ 11746181 (-)