CI01000051_07507549_07530087 (HOMER3)


Basic Information

Item Value
gene id CI01000051_07507549_07530087
gene name HOMER3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7507549 ~ 7530087 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_07507549_07530087.mRNA
GAGCAGCCACTATTCAGCATGAAGGCTCACGTCTTCCAAATTGACCCAGACACTAAACGAAATTGGATTCCAGCCAGCAAACACGCCGTCACAGTCTCCTTCTTCTATGATGCTGGCAGGAGCGTGTATCGCATCATCAGCGTTGGGGGCACTAAGGCGATTATCAACAGCACCATCACACCTAATATGACTTTCACCAAAACGTCACAGAAGTTTGGCCAGTGGGCGGACAGCAGGGCGAACACAGTGTATGGCCTTGGGTTTGCCACAGAGCAGCAGCTTCAGCAGTTCTCAGAGCAGTTTAAAGAGCTTAAGGAGGCTGCACGGCTCGTCCGGGATAAATCACAGGAGAAGTTTGAGCTGCTGAGTCCTGGCCTAAACATCTCTGCTCCACAGGCACTGTCGGTGGACCGTCAGTCTCCTCCACTGCTTGGTGTCAATGGCTCTAGTGAGGACAAGTTGTTTCGCAGCAAGAGTGCTGATATGGAGCAGTCCATGGAAAAAGAACAGATGAGGAAGATGCTTTCCGAAGGGTCGATATGTGAGAGAAACTCTGAAGCGGAGCTGTTTTCTCTTCGGGACAGCAACGCTAAGCTTGTGGCTGCTCTGCATGAAGCTAACAGCAGCATTGAACATTGGAAAAAACAATTAGCCGAGTATCAGGAAGAAACAGATCACCTCCGAGAACAGGTTGCAGAGCTGGAGGCTCAGAGCAGGGTTTCTGCTTCCAGTGAGATGGGGAGCGAGGAGCTCACACAGTCTATGGCCGAGATGGAGGCTCTTATAAAAGCTAAAGATGAGGAAATAAAGACTCTGCGGGGCAAGAAGCCAGATTTTAGTGAGCTGGAGAAAGAAAGGGAAGAAGCCAGTCAAAGGATGCAGGACCTGGAAGTGAAGAACTCCGAGTTGGAGAAACGAGTGCAAACAGCAGAAAGCGCTTTAGCTTCCTCCCAGGATGCCCAGAACAGGGCGGAGAATGCGGTGCAGAAGGTCATCGAAACTTTAGACGTCAAGATCTACGACTTGAGTGACCTGCGACAAAACCTAGCCAAGCTCCTGGAGAAA

Function

symbol description
homer3 Enables identical protein binding activity. Involved in negative regulation of calcineurin-NFAT signaling cascade and negative regulation of interleukin-2 production. Predicted to be located in basal part of cell. Predicted to be active in several cellular components, including dendrite; glutamatergic synapse; and postsynaptic density.

GO:

id name namespace
GO:0035256 G protein-coupled glutamate receptor binding molecular_function

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_07507549_07530087.mRNA True 1065 mRNA 0.51 8 7507549 7530087

Neighbor

gene id symbol gene type direction distance location
CI01000051_07470914_07489207 LRP1AB, LRP1 coding upstream 18307 7470914 ~ 7489242 (+)
CI01000051_07391277_07399712 ABCB11B, ABCB11 coding upstream 107763 7390634 ~ 7399786 (+)
CI01000051_07378590_07389158 ABCB11B, ABCB11 coding upstream 117979 7378590 ~ 7389570 (+)
CI01000051_07367270_07370738 ATP5B coding upstream 136671 7366852 ~ 7370878 (+)
CI01000051_07345863_07353841 MKNK1 coding upstream 152429 7345863 ~ 7355120 (+)
CI01000051_07534938_07540104 NA coding downstream 2552 7532639 ~ 7540418 (+)
CI01000051_07542167_07549737 ARRDC2 coding downstream 12080 7542167 ~ 7550660 (+)
CI01000051_07611022_07612093 NA coding downstream 80362 7610449 ~ 7612093 (+)
CI01000051_07634084_07726089 NA coding downstream 103792 7633879 ~ 7726109 (+)
CI01000051_07806350_07831779 GRIN3B coding downstream 276263 7806350 ~ 7832334 (+)
G221409 NA non-coding upstream 52012 7455331 ~ 7455537 (+)
G221408 NA non-coding upstream 55538 7451740 ~ 7452011 (+)
G221406 NA non-coding upstream 56659 7450479 ~ 7450890 (+)
G221336 NA non-coding upstream 82130 7422923 ~ 7425419 (+)
G221386 NA non-coding upstream 94542 7401175 ~ 7413007 (+)
G221333 NA non-coding downstream 274264 7804351 ~ 7840774 (+)
G221530 NA non-coding downstream 465935 7996022 ~ 7996297 (+)
G221538 NA non-coding downstream 478828 8008915 ~ 8009351 (+)
G221539 NA non-coding downstream 486157 8016244 ~ 8016535 (+)
G221319 NA other upstream 165003 7342041 ~ 7342546 (+)
CI01000051_06825895_06830637 NA other upstream 674481 6825895 ~ 6830637 (+)
G219803 NA other upstream 2455516 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 3132219 4372658 ~ 4393677 (+)
CI01000051_08211233_08214513 NA other downstream 575556 8209722 ~ 8214696 (+)
G222727 NA other downstream 812855 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location