CI01000051_07913334_07929103 (PALM1A, PALM)


Basic Information

Item Value
gene id CI01000051_07913334_07929103
gene name PALM1A, PALM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7913334 ~ 7929182 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_07913334_07929103.mRNA
TCAAAGGCACTGAGGGAAAGATGGCTGCTGGACGGTGCACCCTCTGCAGGACCGGAGGAAGACGAGACCACAAAACAGTTGCGGGAAGATGAGGCCAAAACCAGAGGTCTTGAGGAGGCCATTCATAGACCAGCTGCAGTTAGAGTCCCTAATGTGGGATCCATCAGCATGGACTGTGTTATATGGATCTACTGGGCAAGATTTTTCTTATCCAGTTTGTCTCAGTTTATTCCTAGTGGTGAAAAAGTGGCATGGGTCTTTCTGCTGGCAGAGCAACTGGAAAGAGAGCTGGAGGAGCTAGAGACAGGTTTGTCTGCAACATCCACCAAAGAGAGCCTGTCCGACGAAGTACAGGAAGTCAACACCAAGACAGTAGAAAAAATGGTTGTGACAGACTCTGTAAAAGAGGTCAAAGTTCACGTCAGCCCTCGTCTGGAGAAATCCGGAGGTGTCTCTGACATGATGAGAGCAGCGATGTACTCCGTAGAGATCACAGTTGAGAAGGACCTGGTGACTGGCGAGACCAAAGTCCTGTCCACTAACACACTGCTCCCCAAAGACCTCTCGCAGCAGGGGGTCAAGGTCTATGAGGATGAACAGAAAGTGGTGCATGAAGTGCGCAGTGTGGACGGCACAGTAACCAATGGCGTTCACCAGCTCAGCTCTTCAGAGGTGGATGAGCTCCTCCACAAAGCTGATGAGGTGACCATGAGTGAGAGTGGCAAGACTACGCCGCGACTGGAACGAGGGCAGGCCGAGAAAGTGGAGAAGGTTGAGAAAGACATAGTCCCAGCTGCAGCCGGCTCCACCCCCATAATGGAGATCACGGGTGTAGAACCGAAACCCGCAACACCTCAGACAGAAGTGGGCGGGGCCAGTGCAGAGAACCCAGTTACGATGGTTTTCATGGGTTTCCAGAGCGTGGAGGACGAGGATGAAACAAAGAAGGTTTTGGGGCAGGAAAGCACGACTGTGAAGGCTGAAGTGGTCGTCATAGAGGACGGAGATGCCAAGACCACCACCACCAGTGACACCACGCAGGAGCAGGCACCCCCTAATGGCAGCCCAGCAGATCCACCGAAGGCTGAAGAGGCGGCAGGAGAGTCAGGACAGCCAGAAGGGGGCGCTGCTGAGGTCAAGAGCAAGGAGAAACAACCCTGCAAATGCTGCACCATCATGTGAGCCTAAACACACCCTCCCAAACACGGACTTTACTGATGAAATGCAACAACATACAGAGAGAACAATAGCAAGGCAAAGA

Function

symbol description
palm1a Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Is expressed in several structures, including adaxial cell; basal plate midbrain region; myotome; nervous system; and solid lens vesicle. Orthologous to human PALM (paralemmin).
palm Predicted to enable D3 dopamine receptor binding activity. Involved in negative regulation of dopamine receptor signaling pathway and positive regulation of filopodium assembly. Located in filopodium membrane and nucleoplasm.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_07913334_07929103.mRNA True 1261 mRNA 0.53 7 7913334 7929182

Neighbor

gene id symbol gene type direction distance location
CI01000051_07873312_07878328 PLPPR3B, PLPPR3 coding upstream 34707 7873077 ~ 7878627 (+)
CI01000051_07855788_07865402 MED16 coding upstream 47709 7855240 ~ 7865625 (+)
CI01000051_07806350_07831779 GRIN3B coding upstream 81000 7806350 ~ 7832334 (+)
CI01000051_07634084_07726089 NA coding upstream 187225 7633879 ~ 7726109 (+)
CI01000051_07611022_07612093 NA coding upstream 301241 7610449 ~ 7612093 (+)
CI01000051_07938052_07941645 MISP coding downstream 8510 7937692 ~ 7942111 (+)
CI01000051_07946087_07950464 NA coding downstream 16834 7946016 ~ 7951481 (+)
CI01000051_07954270_07957397 NA coding downstream 25088 7954270 ~ 7957559 (+)
CI01000051_07963621_07976671 PTBP1B, PTBP1 coding downstream 34439 7963621 ~ 7978209 (+)
CI01000051_07978982_07979269 NA coding downstream 49208 7978390 ~ 7979303 (+)
G221333 NA non-coding upstream 72560 7804351 ~ 7840774 (+)
G221409 NA non-coding upstream 457797 7455331 ~ 7455537 (+)
G221408 NA non-coding upstream 461323 7451740 ~ 7452011 (+)
G221406 NA non-coding upstream 462444 7450479 ~ 7450890 (+)
G221530 NA non-coding downstream 66840 7996022 ~ 7996297 (+)
G221538 NA non-coding downstream 79733 8008915 ~ 8009351 (+)
G221539 NA non-coding downstream 87062 8016244 ~ 8016535 (+)
G221552 NA non-coding downstream 112435 8041617 ~ 8041854 (+)
G222631 NA non-coding downstream 294768 8223950 ~ 8224280 (+)
G221386 NA other upstream 500327 7401175 ~ 7413007 (+)
G221319 NA other upstream 570788 7342041 ~ 7342546 (+)
CI01000051_06825895_06830637 NA other upstream 1080266 6825895 ~ 6830637 (+)
G219803 NA other upstream 2861301 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 3538004 4372658 ~ 4393677 (+)
CI01000051_08211233_08214513 NA other downstream 176461 8209722 ~ 8214696 (+)
G222727 NA other downstream 413760 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location