CI01000051_07963621_07976671 (PTBP1B, PTBP1)


Basic Information

Item Value
gene id CI01000051_07963621_07976671
gene name PTBP1B, PTBP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7963621 ~ 7978209 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_07963621_07976671.mRNA
CAGTGCTGATCAGAGGGAAGATGGCTGGGGGAGGTGCTAATGGGTCACACGGGGGTTCGCTTGATGCTATCAGTCTCTCTTCCTTGTTCTCGGTATCTCATAAAGAATGCCAGTCGAAAGCTTGTGGGTCACAGGGCAGTGATGCGTACATCTCCACAGGGACAATTACTGATGGGCAGTTGCTATTATTGCACAATGTTAAACTGAGGAATGGATCTGTGCTCATGACCTGTATGGTTAGTGTAAGAGGATCTGACGAGCTGTTCTCCTGTGTTTCCAGTGGGCCCTATATCATGAGCACAGCAGCCAACGGCAACGACAGCAAGAAGTTCAAAGGTGAAATCAGAAGTCCCGCTGCTCCGTCCAGAGTTATACATGTCCGGAAGCTGCCCAATGACATAAACGAAGCAGAGGTCATCTCCCTCGGCCTTCCATTTGGCAAAGTCACCAATCTGCTCATGCTAAAGGGAAAGAACCAGGCTTTCTTGGAAATGAATACCGAAGAAGCAGCACAGACGATGGTTACTTACTACTCCTCCGTAACACCCGTCATCAGAAATCATCCCATCTTTATGCAGTACTCCAACCACAAAGAGCTGAAAACAGACAACTCACCAAACCAAGTGAGGGCACAGGCAGCACTGCAGGCAGTAAATGCTGTCCAGACAGGTAGCATGACTTTAGGTGCTGTTGACCCATCCGGTATGACTGGCCCCAGCCCTGTCCTGAGAGTCATCGTTGAAAACCTCTTCTACCCCGTGACCTTAGATGTCCTGCACCAGGTATACACTTCCTCTAGTCTATTCTACACCGTGACCTTAGATGTCCTGCACCAGATCTTCTCCAAGTTTGGTACAGTGCTGAAAGTGATCACATTCACCAAAAACAACCAATTTCAAGCTCTACTCCAGTTTGCCGATGGCCTGACAGCTCAACATGCCAAGCTGGCTCTAGATGGCCAGAACATCTATAATGGCTGCTGTACCCTGCGCATTAGCTTTTCCAAACTTACCAGCTTAAATGTCAAATACAATAATGACAAGAGCCGTGACTACACTCGTCCAGACCTGCCCACAGGGGACAGCCAGCCTGCTCTTGAACATCACGCCATGGCTGCTTTCGCTACTCCCGGAATCATCTCTGCCTCACCATACGCGGGAGCACACGCCTTCCCTCCGGCTTTTGCTATCCAGCAGGCTGCAGGGTTGACAATACCTGGGGTTCATGGAGCCCTCGCCTCACTAGCCATTCCTGGGGCAGCAGCAGCTGCTGCGGCTGCAAGCAGACTGGGCTTCCCCTCCCTCCCCGGCACCCACTGTGTCATGCTGGTCAGCAACCTGAACCCAGAGGCATCTGTGAGGCCCAATTCTTTGAGTGCCTCGCTTGTTTTCTGCAGTATTTGGTGTGGTGTATATGGGGATGTATTGAGAGTAAAAATCATGTTCAACAAAAAGGAGAACGCTCTCATACAGATGTCTGATGGGACACAGGCCCAGCTCGCAATGAGCCATCTAAGTGGGCAGAAGTTATACGGCAGGCCCCTGCGCATCACACTGTCCAAACACACGACTGTCCAGATGCCACGGGAGGGACATGAAGACCAGGGTCTCACCAAAGACTACAGCAACTCTCCTCTCCATCGCTTCAAGAAGCCAGGCTCAAAAAACTACTCCAACATCTTTCCTCCCTCATCTACCCTGCACCTGTCTAACATCCCACCCGCCGTTGTTGAAGATGACCTCAAGATGCTTTTTGCTAGCAGTGGTGCTCTTGTCAAGAACTTCAAGTTTTTTCAGAAGGATCGCAAGATGGCTCTGATTCAGATGGGTTCTGTGGAGGAAGCAATCGAGTCCCTTATCCAGTTCCACAACCATGATCTCGGAGAAAACCACCATCTTAGGGTTTCCTTCTCCAAGTCCACCATTTGAGATAAATATTGTCTAGAATGGACGGGAGTGGCCAGTCATTTTAAACCTTAATGAGTCTTAATCACTTAAGCTCACTTCCATCATTCCATTATTTTATTTAAGAGGCATTTTAGTGGATATTTACAAATGTACTTTTATTTTATTTTATTCAAAGTTTTAGAACAGGTGTATTATTTGTTTGCCCCGCAAAGTTCATTAACTATTTATCACTCCATTTATCATTTTCAGTCTAGTTAAGGCTTAAAAATGATTTCTGTAAAAGCAGAGATGAACCACTTCAGGCCTTTGATTCCATTTGTACCATTTGTGCCTTCAGATCTCTGGAACCTCAGTCAAACATCTGCAACTAATGTTTGCAAATCTGTGGATTACAGTCTATTTCATGCCCTCAGGGCCAAGCATTGACACTCCTATGAGACATGGGTAATTTCATCAGGCTGATGGTACAGGCCTTAAACTCTGCACCTCTGTGTTATGTATCTCCCAGTAGGCTCGTATTCATCATATCCTCTAGCTTTAGCGTTTATACTGTATTTTAGACATAGAATGTTTACAGGCATTTTTCTCCAAGTTACTGCAATCATTTGTGTTTAAATCCTATAGTGTTGTCAAGATTTGTATTGTTTTTATACTATGGGCCATTGCATGTTGGCTGTGGTCAGTGGATCATTAAGTGCTGACCGTTTACTGTTTGTCCTGTATTTTGCGTAGATGTTCAGTGTCAGGCTTCATGTTATTGTGTGATATAGTAGATCATTTAAGCTATTCTACTCCAATGCCCCATGTATTTTATGTATTCATGTACCTATGTGTACACTACAGCTTGATACCAAAGCCTTTCATCCATGTACCTGCGTAAGAGACATCTTGACACCTTTTAGCCTCACAACAAACAGCATGTACAAACATGTCCTTTCAGAGTGTCTTGATGCTTTCCCTTCTTTGTAGAGAACAGTACTGTGTGATGGAAAGAGTTCAAGTTAATTGGGATGGGTGACAGACATTACTGATAATCAGCACACCTGCTGAATTGTGCACATCATAATGCTGCGATCCGACACAATGGCCTTCAGTGACCTCTGTAAAATGAGTTTGGGCCTTTGAAATCTGACAAGTGCCTTTTTAAAATGTCTCGGTTGACTCACAGCAGTCCATCCTGGTGACATTCAGCTGCATTAACTTTCAAAAGATGTTTTATGAAAGGCCTGATGATGGCCTCAATTTGGCACTCGGACCGGAAATTATAAAGAAAATTGAATCTACTTTGTTTATATTATATTCCCGGCAATGTTTCATAATGGATCAAGTTATTTTACTTTAATATTTTACATTTTCTCATTAGGTTCTGTGTTTTTTCTTCTTCTTTGTTATATGTTTTACAATTTGTGTGGGACCAATCTGAAAAAAAAAAAGAGGTGGCGCTTTAAAAAAAAAAATGCAAATGCTCCTTGGATATAGAAAAAAGCCGCTTTATCATTTTTGAGAACATTGATTCTTCACAGTGGCTGGATAACCTGATTATGCATCCTTGCACAACA

Function

symbol description
ptbp1b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing and regulation of cell differentiation. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including EVL; axis; mesoderm; nervous system; and pronephric duct. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).
ptbp1 Enables pre-mRNA binding activity. Involved in several processes, including IRES-dependent viral translational initiation; positive regulation of calcineurin-NFAT signaling cascade; and regulation of mRNA splicing, via spliceosome. Located in extracellular exosome and membrane.

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process

KEGG:

id description
K13218 PTBP1, PTB; polypyrimidine tract-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_07963621_07976671.mRNA True 3466 mRNA 0.44 15 7963621 7978209

Neighbor

gene id symbol gene type direction distance location
CI01000051_07954270_07957397 NA coding upstream 6062 7954270 ~ 7957559 (+)
CI01000051_07946087_07950464 NA coding upstream 12140 7946016 ~ 7951481 (+)
CI01000051_07938052_07941645 MISP coding upstream 21510 7937692 ~ 7942111 (+)
CI01000051_07913334_07929103 PALM1A, PALM coding upstream 34439 7913334 ~ 7929182 (+)
CI01000051_07873312_07878328 PLPPR3B, PLPPR3 coding upstream 84994 7873077 ~ 7878627 (+)
CI01000051_07978982_07979269 NA coding downstream 181 7978390 ~ 7979303 (+)
CI01000051_08046197_08069874 NA coding downstream 67686 8045895 ~ 8069917 (+)
CI01000051_08171018_08172280 EFNA2 coding downstream 192809 8171018 ~ 8172544 (+)
CI01000051_08211233_08214513 NA coding downstream 231513 8209722 ~ 8214696 (+)
CI01000051_08381644_08388611 NA coding downstream 403382 8381591 ~ 8389116 (+)
CI01000051_07806350_07831779 GRIN3B non-coding upstream 96593 7806350 ~ 7832334 (+)
G221333 NA non-coding upstream 122847 7804351 ~ 7840774 (+)
G221409 NA non-coding upstream 508084 7455331 ~ 7455537 (+)
G221408 NA non-coding upstream 511610 7451740 ~ 7452011 (+)
G221406 NA non-coding upstream 512731 7450479 ~ 7450890 (+)
G221530 NA non-coding downstream 17813 7996022 ~ 7996297 (+)
G221538 NA non-coding downstream 30706 8008915 ~ 8009351 (+)
G221539 NA non-coding downstream 38035 8016244 ~ 8016535 (+)
G221552 NA non-coding downstream 63408 8041617 ~ 8041854 (+)
G222631 NA non-coding downstream 245741 8223950 ~ 8224280 (+)
G221386 NA other upstream 550614 7401175 ~ 7413007 (+)
G221319 NA other upstream 621075 7342041 ~ 7342546 (+)
CI01000051_06825895_06830637 NA other upstream 1130553 6825895 ~ 6830637 (+)
G219803 NA other upstream 2911588 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 3588291 4372658 ~ 4393677 (+)
G222727 NA other downstream 364733 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location