G217589


Basic Information

Item Value
gene id G217589
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 472640 ~ 473690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU246834
CCATTTTGGAGCTATATTCTTCAAAACATACCTCTTTCTTGTTCTATATATATTTTTTATTATTTTTTTTCTAAGATGTTTACCATTCATCCTGCTGAGCTCAGACTTCATGTTCATAAAGGCATCTTGCACTGCTGGCAGTGCTGTCACCTCACACATAAGAAATGGTCTTACATCTCACATTATCTGCTGCACGGCAGGAAAAAAAACATGTTCCCCACAAACACAATTGATCATTTAAAAAGTCTCAGCTAGGGAGGGCTCAGATTGTCAAATTCATCCACAAATCAGCTTTTTTTTCTCCAGATGCATAGTATAGATTTGCCATGATCTGAAAGATTAAGATGGTTGCTGGACTTGTTGATGAATTAATATAACACGAAGCTGTGAGATTCAGTTGGCCATATTTTGTTGTCACTTGAAAAGCTAACCTAACTGTGAATTTTGGCCATGCATCATGCTGTTACAGAGCCTTGAGAAAAGACTCATGAAAAATTAAAGGTGCATTTCCAGCAACATTTCTAATCAAGAAATCTTGATTGAGCGTGCAATGCATGTGACAAATTACCAACACAGCAACACTTCTGCAAAGCAAATCAAGTCAATTTGAAACAACTCTCACTACTGAAATTATAAAATAAATATATCTACTGAAAAGTATAAATTATGTCATAATATTCTTGTCAAGGTTTTAAAATTATCCCAGTGAAATGTACACAAGCAAAAAACATTCACTACTGACACATAAAGCAATACTGTATGAAATGTCAGCGGTCTCAGTACAGAGCCTTGAGGCACTCCTTACACTGCAGCGTTTCGGCCCGGTTCTTCTGGATCATGATGCAGAGCTGGAGAACCAGCTGTGGAGCGCTTTCCAGAAATGTCTCCAGTAGACGGAGCATGTTGACATCGGCATACTCGTACATCATGGCCCAGTAGAAGCGTCGCTGGTTCTCCTTTTGCCTGCGACTCTGGATGCCGAGATACATTGTTCTGATGTACCTGCAGAGGTGCAGATGCAGAAAGAAAGGAAAGCAGAGATAGAATGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU246834 True 1051 lncRNA 0.39 1 472640 473690

Neighbor

gene id symbol gene type direction distance location
CI01000051_00394082_00407612 MTMR9 coding downstream 65028 392720 ~ 407612 (-)
CI01000051_00383638_00388102 TDH, TDH.S coding downstream 84538 383322 ~ 388102 (-)
CI01000051_00357855_00378052 NA coding downstream 94588 356834 ~ 378052 (-)
CI01000051_00346827_00352024 NA coding downstream 120259 346827 ~ 352381 (-)
CI01000051_00334616_00337009 SOX7 coding downstream 135443 334053 ~ 337197 (-)
CI01000051_00478608_00478959 NA coding upstream 4540 475707 ~ 482200 (-)
CI01000051_00505008_00505358 FAM167AB coding upstream 31318 505008 ~ 505468 (-)
CI01000051_00520062_00525658 IF5, EIF5 coding upstream 46120 519810 ~ 525658 (-)
CI01000051_00560810_00563417 NA coding upstream 87078 560768 ~ 563417 (-)
CI01000051_00568303_00576339 NA coding upstream 94177 567867 ~ 576339 (-)
G217588 NA non-coding downstream 576 471840 ~ 472064 (-)
G217587 NA non-coding downstream 2315 470017 ~ 470325 (-)
G217586 NA non-coding downstream 4706 467543 ~ 467934 (-)
G217585 NA non-coding downstream 7689 464490 ~ 464951 (-)
G217584 NA non-coding downstream 10022 462405 ~ 462618 (-)
G217590 NA non-coding upstream 201 473891 ~ 474104 (-)
G217591 NA non-coding upstream 930 474620 ~ 474979 (-)
G217597 NA non-coding upstream 55894 529584 ~ 529784 (-)
G217599 NA non-coding upstream 58475 532165 ~ 532469 (-)
CI01000051_00278614_00302552 NA other downstream 190011 278192 ~ 304373 (-)
CI01000051_00224709_00227613 NA other downstream 229614 224507 ~ 227613 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1235608 1784416 ~ 1787760 (-)
G218728 NA other upstream 2053653 2527343 ~ 2546459 (-)
G218861 NA other upstream 2366580 2840270 ~ 2840632 (-)
CI01000051_02955633_02960400 SCRN2 other upstream 2485898 2955380 ~ 2961148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G137428 xkr6b,LOC108435015,LOC108258067,LOC107701509,LOC107746102,LOC103023855,LOC106608336 non-coding NC_056718.1 CM032087.1 10656971 ~ 10657602 (+)