XLOC_009704


Basic Information

Item Value
gene id XLOC_009704
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9526080 ~ 9528306 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021890
CACTTTGCTCGGCTTGGCCGCTCTCGCGCTGAAGTCCAACCCccctaaacaaacaaatagacaaacaaacaagacACGAAGACAGTGGGGGACTGAAGGGGGAGAAGTTAAACTGTGGAAGGATGACGGTATGCCAATGATATGGTGCGTGCACTCATCAATATCACCGCTAACGGAGGAAGGAAAGAAGttgaaaccaATGAGGATGACCTCAACAGGAGAGAGCCTCCAAGTCCCAGTACTAGATGCAGTTAAAGGTCTTTGAACAAAAGTTCGTGAAGGAAGTACTTGAGGTCATTGGGGTGTCCAAAGAATGAGATAGCTTGTTCCTTCCTACTGAAGGCTTTAAAGAGTACATGCTTTGCAAGGACATCAGCAATTACAATTAACAGAAAATGTTAGGGTGGTGTAAGGttagggtg
>TCONS_00019442
GCTGAAGTCCAACCCccctaaacaaacaaatagacaaacaaacaagacACGAAGACAGTGGGGGACTGAAGGGGGAGAAGTTAAACTGTGGAAGGATGACGGTATGCCAATGATATGGTGCGTGCACTCATCAATATCACCGCTAACGGAGGAAGGAAAGAAGttgaaaccaATGAGGATGACCTCAACAGGAGAGAGCCTCCAAGTCCCAGTACTAGATGCAGTTAAAGGCACTTGTGCGATTATTTTCAATTATCAAGTAGTAGAGCTGAGCAATTAATAAAATTTAGATTTAGACCTTCAAAGATTATAAAAAAGTTTTGAGATAAAACAATTTTCAAATC
>TCONS_00021891
GCTGAAGTCCAACCCccctaaacaaacaaatagacaaacaaacaagacACGAAGACAGTGGGGGACTGAAGGGGGAGAAGTTAAACTGTGGAAGGATGACGGTATGCCAATGATATGGTGCGTGCACTCATCAATATCACCGCTAACGGAGGAAGGAAAGAAGttgaaaccaATGAGGATGACCTCAACAGGAGAGAGCCTCCAAGTCCCAGTACTAGATGCAGTTAAAGGCACTTGTCTTTGAACAAAAGTTCGTGAAGGAAGTACTTGAGGTCATTGGGGTGTCCAAAGAATGAGATAGCTTGTTCCTTCCTACTGAAGGCTTTAAAGAGTACATGCTTTGCAAGGACATCAGCAATTACAATTAACAGAAAATGTTAGGGTGGTGTAAGGttagggtgattttttttttctttacatttgttttcaatatttgATTAGttaacttttatattttaaatttaaaaagttttaaaaagaataaag

Function

GO:

id name namespace
GO:0044451 obsolete nucleoplasm part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021890 False 422 lncRNA 0.46 3 9526080 9528221
TCONS_00019442 False 344 processed_transcript 0.40 2 9526107 9527209
TCONS_00021891 True 486 lncRNA 0.39 3 9526107 9528306

Neighbor

gene id symbol gene type direction distance location
XLOC_009703 NA coding upstream 10273 9515326 ~ 9515807 (+)
XLOC_009702 NA coding upstream 20561 9504373 ~ 9505519 (+)
XLOC_009701 pimr208 coding upstream 23926 9495583 ~ 9502154 (+)
XLOC_009700 ice1 coding upstream 105722 9400661 ~ 9420358 (+)
XLOC_009698 dnah5 coding upstream 258584 9053275 ~ 9267496 (+)
XLOC_009705 ca14 coding downstream 11727 9540033 ~ 9558103 (+)
XLOC_009706 taf2 coding downstream 52393 9580699 ~ 9606284 (+)
XLOC_009707 enpp2 coding downstream 81415 9609721 ~ 9662205 (+)
XLOC_009708 ecm1b coding downstream 185544 9713850 ~ 9725432 (+)
XLOC_009709 pip5k1ab coding downstream 197732 9726038 ~ 9761973 (+)
XLOC_009699 CR394537.2 non-coding upstream 288834 9237132 ~ 9237246 (+)
XLOC_009697 NA non-coding upstream 559154 8966209 ~ 8966926 (+)
XLOC_009696 NA non-coding upstream 560241 8964889 ~ 8965839 (+)
XLOC_009712 NA non-coding downstream 484029 10012335 ~ 10016713 (+)
XLOC_009715 FP016064.1 non-coding downstream 796243 10324549 ~ 10324665 (+)
XLOC_009718 NA non-coding downstream 850025 10378331 ~ 10379821 (+)
XLOC_009719 CU929328.1 non-coding downstream 859413 10387719 ~ 10389787 (+)
XLOC_009724 NA non-coding downstream 1089048 10617354 ~ 10617686 (+)

Expression


Co-expression Network