Gene
RNA
| Item | Value |
|---|---|
| gene id | G219040 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 3220173 ~ 3224648 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU248426 | False | 3609 | lncRNA | 0.37 | 1 | 3220173 | 3223781 |
| TU248427 | False | 1679 | lncRNA | 0.36 | 1 | 3220173 | 3221851 |
| TU248429 | False | 3941 | lncRNA | 0.38 | 1 | 3220173 | 3224113 |
| TU248430 | False | 693 | lncRNA | 0.49 | 1 | 3223865 | 3224557 |
| TU248433 | False | 249 | lncRNA | 0.45 | 1 | 3223865 | 3224113 |
| TU248428 | False | 384 | lncRNA | 0.52 | 1 | 3224174 | 3224557 |
| TU248432 | True | 475 | lncRNA | 0.49 | 1 | 3224174 | 3224648 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_03147600_03152676 | MYOC | coding | upstream | 67079 | 3147234 ~ 3153094 (+) |
| CI01000051_03128080_03133290 | NA | coding | upstream | 86852 | 3128080 ~ 3133321 (+) |
| CI01000051_03107566_03109607 | ITPA | coding | upstream | 110443 | 3107566 ~ 3109730 (+) |
| CI01000051_03038457_03041581 | PIGC | coding | upstream | 177440 | 3036852 ~ 3042733 (+) |
| CI01000051_03022303_03035625 | TMED5 | coding | upstream | 184318 | 3021494 ~ 3035855 (+) |
| CI01000051_03431193_03432454 | JUN | coding | downstream | 205643 | 3430291 ~ 3432788 (+) |
| CI01000051_03435613_03439371 | NA | coding | downstream | 210965 | 3435613 ~ 3439851 (+) |
| CI01000051_03443548_03451188 | NA | coding | downstream | 218900 | 3443548 ~ 3451814 (+) |
| CI01000051_03457204_03459579 | NA | coding | downstream | 232311 | 3456959 ~ 3459924 (+) |
| CI01000051_03679568_03682342 | NA | coding | downstream | 454789 | 3679437 ~ 3682528 (+) |
| G219029 | NA | non-coding | upstream | 22875 | 3196985 ~ 3197298 (+) |
| G219028 | NA | non-coding | upstream | 23273 | 3196689 ~ 3196900 (+) |
| G218967 | NA | non-coding | upstream | 56828 | 3162735 ~ 3163345 (+) |
| G219019 | NA | non-coding | upstream | 96233 | 3123697 ~ 3123940 (+) |
| G219015 | NA | non-coding | upstream | 122384 | 3096824 ~ 3097789 (+) |
| G219041 | NA | non-coding | downstream | 7114 | 3231762 ~ 3232556 (+) |
| G219043 | NA | non-coding | downstream | 11040 | 3235688 ~ 3236042 (+) |
| G219044 | NA | non-coding | downstream | 11540 | 3236188 ~ 3236417 (+) |
| G218956 | NA | non-coding | downstream | 12202 | 3236850 ~ 3244568 (+) |
| G219045 | NA | non-coding | downstream | 71350 | 3295998 ~ 3296544 (+) |
| CI01000051_02060996_02061735 | NA | other | upstream | 1154090 | 2060534 ~ 2062355 (+) |
| CI01000051_00638200_00720543 | CDC42BPB | other | upstream | 2495469 | 637590 ~ 720669 (+) |
| G217075 | NA | other | upstream | 2836045 | 324465 ~ 384128 (+) |
| G218981 | NA | other | downstream | 20795 | 3245443 ~ 3246873 (+) |
| CI01000051_04374052_04393328 | NA | other | downstream | 1149762 | 4372658 ~ 4393677 (+) |
| G219803 | NA | other | downstream | 1690326 | 4914974 ~ 5052033 (+) |
| CI01000051_06825895_06830637 | NA | other | downstream | 3601151 | 6825895 ~ 6830637 (+) |
| G221319 | NA | other | downstream | 4117393 | 7342041 ~ 7342546 (+) |
