G219045


Basic Information

Item Value
gene id G219045
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3295998 ~ 3296544 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU248443
TGTTCCTGTCAGTTCCTGGACTCCATTTCCCATAATCCTCCTTGCCAATCACATGCACACTCCACACCAATCACCAGTTGCCACATACAGCTTAGCACACTACCTGGACTATAAAGGACTTACACACACACCACCTCATTGCGAAGTCTTGATTTGCTGTTGTGATCATTACTGAGCGTTTTCTTGTGGACTGTTTCCTGGTTTCCGGTTGGATTGTTTATTCTTTGTGATTCTCTGCTGCCTGCCCTGATCTTTGCCTGTTTCCTGGACTGTGATTGTTTGCTGCCTGCCCTGATCCTTGCCTGTACCCTGATTCTGTTTGTCTGCCGCCTGCCTCGACCATTGCCTGTCCTTGTTTA
>TU248448
TGTTCCTGTCAGTTCCTGGACTCCATTTCCCATAATCCTCCTTGCCAATCACATGCACACTCCACACCAATCACCAGTTGCCACATACAGCTTAGCACACTACCTGGACTATAAAGGACTTACACACACACCACCTCATTGCGAAGTCTTGATTTGCTGTTGTGATCATTACTGAGCGTTTTCTTGTGGACTGTTTCCTGGTTTCCGGTTGGATTGTTTATTCTTTGTGATTCTCTGCTGCCTGCCCTGATCTTTGCCTGTTTCCTGGACTGTGATTGTTTGCTGCCTGCCCTGATCCTTGCCTGTACCCTGATTCTGTTTGTCTGCCGCCTGCCTCGACCATTGCCTGTCCTTGTTTATGTTCCTGCCTCTGCCCCTGTCTACCTGTGTAAATACTGTTCTTAATAAAGCTTGCAAATGGATCCCCGCTCTGCCGACCCATCATTACAATTAAAACTAGATGAGCAAAGTTTGTTGGGACAAACTTTGATGTTGGCTGGACAAAGCTGAATGAAAGTTTGAAAGTTTTATTAGCTTTAAATTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248443 False 359 lncRNA 0.48 1 3295998 3296356
TU248448 True 547 lncRNA 0.45 1 3295998 3296544

Neighbor

gene id symbol gene type direction distance location
CI01000051_03147600_03152676 MYOC coding upstream 142904 3147234 ~ 3153094 (+)
CI01000051_03128080_03133290 NA coding upstream 162677 3128080 ~ 3133321 (+)
CI01000051_03107566_03109607 ITPA coding upstream 186268 3107566 ~ 3109730 (+)
CI01000051_03038457_03041581 PIGC coding upstream 253265 3036852 ~ 3042733 (+)
CI01000051_03022303_03035625 TMED5 coding upstream 260143 3021494 ~ 3035855 (+)
CI01000051_03431193_03432454 JUN coding downstream 133747 3430291 ~ 3432788 (+)
CI01000051_03435613_03439371 NA coding downstream 139069 3435613 ~ 3439851 (+)
CI01000051_03443548_03451188 NA coding downstream 147004 3443548 ~ 3451814 (+)
CI01000051_03457204_03459579 NA coding downstream 160415 3456959 ~ 3459924 (+)
CI01000051_03679568_03682342 NA coding downstream 382893 3679437 ~ 3682528 (+)
G218956 NA non-coding upstream 51430 3236850 ~ 3244568 (+)
G219044 NA non-coding upstream 59581 3236188 ~ 3236417 (+)
G219043 NA non-coding upstream 59956 3235688 ~ 3236042 (+)
G219041 NA non-coding upstream 63442 3231762 ~ 3232556 (+)
G219040 NA non-coding upstream 71350 3220173 ~ 3224648 (+)
G219048 NA non-coding downstream 26128 3322672 ~ 3322970 (+)
G219050 NA non-coding downstream 29510 3326054 ~ 3326661 (+)
G219052 NA non-coding downstream 38986 3335530 ~ 3335774 (+)
G219070 NA non-coding downstream 77344 3373888 ~ 3374125 (+)
G219163 NA non-coding downstream 239216 3535760 ~ 3536015 (+)
G218981 NA other upstream 49125 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 1229915 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 2571294 637590 ~ 720669 (+)
G217075 NA other upstream 2911870 324465 ~ 384128 (+)
CI01000051_04374052_04393328 NA other downstream 1077866 4372658 ~ 4393677 (+)
G219803 NA other downstream 1618430 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 3529255 6825895 ~ 6830637 (+)
G221319 NA other downstream 4045497 7342041 ~ 7342546 (+)
G221386 NA other downstream 4112979 7401175 ~ 7413007 (+)

Expression


Co-expression Network