G219048


Basic Information

Item Value
gene id G219048
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3322672 ~ 3322970 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU248460
TCAGATGTTAAACCTCAGATCAGGCTGGAGCCATGGCCTAGCATTGAGCCATGGTTCTCATTTGGGAAATCTAGGTTCAAATCTAGGTTCCATATTTACTTCTCAACTCTCTACTTTTCCTTTTCTACTTTCAAATTGTTATATTCCTTCTTAATGAGCCAGATTAAAGAACTAATAATAATAATAAAAAAATCTGGATCAACCTAAGAAGCTTAGAAATATTTTTAGCACTCTATCTTTCCAATTGAACAACATATATCACTAGCCCGGAGGATACTAATCCAAGTCCTGAAGCGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248460 True 299 lncRNA 0.36 1 3322672 3322970

Neighbor

gene id symbol gene type direction distance location
CI01000051_03147600_03152676 MYOC coding upstream 169578 3147234 ~ 3153094 (+)
CI01000051_03128080_03133290 NA coding upstream 189351 3128080 ~ 3133321 (+)
CI01000051_03107566_03109607 ITPA coding upstream 212942 3107566 ~ 3109730 (+)
CI01000051_03038457_03041581 PIGC coding upstream 279939 3036852 ~ 3042733 (+)
CI01000051_03022303_03035625 TMED5 coding upstream 286817 3021494 ~ 3035855 (+)
CI01000051_03431193_03432454 JUN coding downstream 107321 3430291 ~ 3432788 (+)
CI01000051_03435613_03439371 NA coding downstream 112643 3435613 ~ 3439851 (+)
CI01000051_03443548_03451188 NA coding downstream 120578 3443548 ~ 3451814 (+)
CI01000051_03457204_03459579 NA coding downstream 133989 3456959 ~ 3459924 (+)
CI01000051_03679568_03682342 NA coding downstream 356467 3679437 ~ 3682528 (+)
G219045 NA non-coding upstream 26128 3295998 ~ 3296544 (+)
G218956 NA non-coding upstream 78104 3236850 ~ 3244568 (+)
G219044 NA non-coding upstream 86255 3236188 ~ 3236417 (+)
G219043 NA non-coding upstream 86630 3235688 ~ 3236042 (+)
G219041 NA non-coding upstream 90116 3231762 ~ 3232556 (+)
G219050 NA non-coding downstream 3084 3326054 ~ 3326661 (+)
G219052 NA non-coding downstream 12560 3335530 ~ 3335774 (+)
G219070 NA non-coding downstream 50918 3373888 ~ 3374125 (+)
G219163 NA non-coding downstream 212790 3535760 ~ 3536015 (+)
G219154 NA non-coding downstream 214217 3537187 ~ 3537679 (+)
G218981 NA other upstream 75799 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 1256589 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 2597968 637590 ~ 720669 (+)
G217075 NA other upstream 2938544 324465 ~ 384128 (+)
CI01000051_04374052_04393328 NA other downstream 1051440 4372658 ~ 4393677 (+)
G219803 NA other downstream 1592004 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 3502829 6825895 ~ 6830637 (+)
G221319 NA other downstream 4019071 7342041 ~ 7342546 (+)
G221386 NA other downstream 4086553 7401175 ~ 7413007 (+)

Expression


Co-expression Network