G219253


Basic Information

Item Value
gene id G219253
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3810745 ~ 3825351 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU248692
CAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAGAAAAATGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGCTGTTCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACATCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAATAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATTTCTGCTGCACTTAAGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU248692 True 360 lncRNA 0.38 2 3810745 3825351

Neighbor

gene id symbol gene type direction distance location
CI01000051_03687377_03698806 ANGPTL1A, ANGPTL1 coding upstream 111782 3687324 ~ 3698963 (+)
CI01000051_03679568_03682342 NA coding upstream 128217 3679437 ~ 3682528 (+)
CI01000051_03457204_03459579 NA coding upstream 350821 3456959 ~ 3459924 (+)
CI01000051_03443548_03451188 NA coding upstream 358931 3443548 ~ 3451814 (+)
CI01000051_03435613_03439371 NA coding upstream 370894 3435613 ~ 3439851 (+)
CI01000051_04038453_04045552 TMEM30A, TMEM30AA, TMEM30AB coding downstream 213056 4038407 ~ 4046528 (+)
CI01000051_04071144_04075444 KCNK13B coding downstream 245793 4070951 ~ 4077125 (+)
CI01000051_04081532_04085798 PSMC1B, PSMC1, PSMC1A, PSMC1.L coding downstream 256181 4081532 ~ 4085922 (+)
CI01000051_04094412_04101387 CALM2, CALM3, CALM1 coding downstream 269003 4094354 ~ 4101516 (+)
CI01000051_04155754_04157992 NFKBIAA coding downstream 330333 4155684 ~ 4158329 (+)
G219303 NA non-coding upstream 28670 3778632 ~ 3782075 (+)
G219249 NA non-coding upstream 100985 3708630 ~ 3709760 (+)
G219176 NA non-coding upstream 158150 3649759 ~ 3652595 (+)
G219237 NA non-coding upstream 162982 3647487 ~ 3647763 (+)
G219210 NA non-coding upstream 208831 3601657 ~ 3601914 (+)
G219314 NA non-coding downstream 7058 3832409 ~ 3832658 (+)
G219316 NA non-coding downstream 9937 3835288 ~ 3835504 (+)
G219318 NA non-coding downstream 13834 3839185 ~ 3839477 (+)
G219322 NA non-coding downstream 19371 3844722 ~ 3844926 (+)
G219323 NA non-coding downstream 19687 3845038 ~ 3845305 (+)
G218981 NA other upstream 563872 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 1744662 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 3086041 637590 ~ 720669 (+)
G217075 NA other upstream 3426617 324465 ~ 384128 (+)
CI01000051_04374052_04393328 NA other downstream 549059 4372658 ~ 4393677 (+)
G219803 NA other downstream 1089623 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 3000448 6825895 ~ 6830637 (+)
G221319 NA other downstream 3516690 7342041 ~ 7342546 (+)
G221386 NA other downstream 3584172 7401175 ~ 7413007 (+)

Expression


Co-expression Network