G220807


Basic Information

Item Value
gene id G220807
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5375682 ~ 5376525 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU250428
CGGTCAATATCAGTTTTAATGAAAATCACGAGGTTCATAAAAGAGGAACAGCTCGGCGTTCACTGAAGCTAAACATGAACAGACACGCTGAAGTCCAGTTCTAATATATATGCACATAATGCAGACCGTACCCTCTGACCACAGACCTAATGAAGATCTCACTGTTCAGTTTATTGGCACATTCAAGGGTGAGGTAAGGAGAAATGTTAAGTGCTTTTCTCTTGTCATCGTAAAGGCATGGGGGTGTTGATTTTCAGGATTGCTGTAAACAAATCATACAAAATGAAGACATAAAACTAAGAGGAGATTCAGTTAGGAATCTTTCTAACAGCCTCAGTGGAAAACATCCAGACTTTCTCTTTCATGCATGTTAAAGCATAAACTCTAATTCAGTGGTGATCATAGCAAAGAGTGCAGCTCAAATATGCAGTAGATTTCAGTGTCTATCATGCAAGTGTAGAGAAGAAACTAATGCTTCAGTGTATTAGAAAAAAGTAGAAAGAACAGGACCGGAAATATCTTTAAAGGAATAGTTCAGCCAAAAATACAAATTCTGTCATCATTCTCCCTAATGACGTTCCAAACTCATATGGCTTCGTTTCTTCAATGTAGGACAAATGGATCATTTCTTAAGGGATTAGTTTACTTCAGAATTAAAATTTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250428 True 666 lncRNA 0.37 2 5375682 5376525

Neighbor

gene id symbol gene type direction distance location
CI01000051_05320361_05322570 GJD2B, GJD2 coding upstream 51777 5320361 ~ 5323905 (+)
CI01000051_05314994_05317995 ACTC1B, ACTA2, ACTA1, MGC53823, ACTC1, MGC75582, ACT3, ACTC1A, ACTA1A, ACT2, ACTC1.L coding upstream 57497 5314444 ~ 5318185 (+)
CI01000051_05296858_05301152 NA coding upstream 74348 5296684 ~ 5301334 (+)
CI01000051_05254556_05270993 MEIS2B, MEIS2 coding upstream 103854 5254556 ~ 5271828 (+)
CI01000051_05174862_05175926 NA coding upstream 199175 5174108 ~ 5176507 (+)
CI01000051_05401881_05405868 NA coding downstream 25356 5401881 ~ 5405886 (+)
CI01000051_05454570_05480649 NA coding downstream 78007 5454532 ~ 5480935 (+)
CI01000051_05514127_05516929 ZFP36L1B, ZFP36L1 coding downstream 136231 5512756 ~ 5517785 (+)
CI01000051_05523573_05525861 NA coding downstream 146837 5523362 ~ 5527007 (+)
CI01000051_05579061_05584087 CRIP2 coding downstream 202536 5579061 ~ 5584087 (+)
G220730 NA non-coding upstream 170054 5205426 ~ 5205628 (+)
G220727 NA non-coding upstream 172931 5202409 ~ 5202751 (+)
G220726 NA non-coding upstream 175998 5199405 ~ 5199684 (+)
G220725 NA non-coding upstream 176685 5198774 ~ 5198997 (+)
G220701 NA non-coding upstream 198115 5177338 ~ 5177567 (+)
G220830 NA non-coding downstream 56419 5432944 ~ 5433210 (+)
G220844 NA non-coding downstream 106980 5483505 ~ 5484126 (+)
G220846 NA non-coding downstream 108953 5485478 ~ 5485721 (+)
G220850 NA non-coding downstream 113543 5490068 ~ 5490287 (+)
G220856 NA non-coding downstream 121579 5498104 ~ 5498659 (+)
G219803 NA other upstream 323649 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 1000352 4372658 ~ 4393677 (+)
G218981 NA other upstream 2128809 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3309599 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4650978 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1449274 6825895 ~ 6830637 (+)
G221319 NA other downstream 1965516 7342041 ~ 7342546 (+)
G221386 NA other downstream 2032998 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2729118 8209722 ~ 8214696 (+)
G222727 NA other downstream 2966417 8342942 ~ 8343448 (+)

Expression


Co-expression Network