G221311


Basic Information

Item Value
gene id G221311
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7292239 ~ 7293753 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU251031
AGCTTTATAGTCATGGTCACTACAAACGGTCACTGTATTTTGAAGAGTCTTGAAATATATCCTTTTGGTGTTTTGTGTAACAAAACATGAAGGTGAATAAATAAGGACAAATTTTGGGGTGAACGATCCCTTCAACATTACCACAGGCGAATTTTATACTGCTCTACGAATCAAATAAACATACCAGCTGAATTGCAGTCATGTATTTCTTCCACCAGAGGAACTTCTGGAAGCGAGGTCCGGCAGCAGAAAGGCCATAGTAGGAGTACATGATCACATGGACACAAGAGTTGATCATGGCATGGAAGGAGCCCATTCCACCTGCAAGAAACATTGCAGTGAGTTTTAAATGTAAATCACATATGCTACAAGCAGTATAACAACAAAAACAGACTCTGATGACCACCAACACCAAGAGCTTTATTTAAAAGAACCATTAGAACATGCAAAAGTTATTGGCTTGTGGAAAAGCAAGTCTGACTGGAATAGAAATTTGTCAGAGTCCATTAACAGTCATCACGTCAACTGAAACCGCACGTGCCTATCATGTAAATATCTGCTGACTGACCCATATGGGAAGGTGGATTGACTCACCTGGCGCATAGCTCACGCCCCACCACCATGTCCAGGGCATGAAGGAATGGTGGAAGATGTGCAGGAAGGTGATCTGACTGTGTTTCTTACGCAGCACAAAAAACACCGTCCATAAGCTCAATGAACTTTGAAAACAGAAATAACCAGGAGACTCTTGCCATCTGTGAAGAAAAGACATCTTTAATATGGAGAATTTGACTATAATTTGATTATATATGCACAAACTGTAGTAATATTTGAGTATATTACAGGAAATTGAATGCAAATCTTACTCTGAGTCCTTGAGGGCTGTTTGAATAATCACATGGGTCACACCTCCACGTGTATCCTGTCGCCCACCCCGACATCAAGAACTACACATCAAGTAAAGATGAATAAGTATATGAATTTATCTTCAGGAACTGGTTGTGAGCAGCAATTCAAACACACAATGGTGTCTCCATAATGAATAAATATAACACGCCTCTCTCTGAGTCGATACAGACAAACAAACAAGTGTATTCAAGTTCAAACACATCTGCGTGGTCACACCACCTAGCAGAATGAATATCTCTTGATTCTCACCTCATATACTATATATGCAGAGAGGACAACCAAGGACAGGTTGTAAATGATCATAGCTTCTTTCAACTGGTAGGGTTTGCGGTTGGCCATAAACTTAGGGCCGGCGTACAGTACAAAGAAAAGATAAGCAAGCAGAATAGCAGTCATACTGCCAGGACTCTCCATTAGGAGGTAATCCTTCAACCTTGGGTCTAGAAGGAGAGAGAGAGAGAAACACAAAAACACAGCTCTTTTATGTATAGCAATAGCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251031 True 1410 lncRNA 0.41 2 7292239 7293753

Neighbor

gene id symbol gene type direction distance location
CI01000051_07287140_07287867 NA coding upstream 4204 7287140 ~ 7288035 (+)
CI01000051_07267084_07283654 ZFYVE9B coding upstream 8224 7267011 ~ 7284015 (+)
CI01000051_07259968_07261598 BT3L4, BTF3L4 coding upstream 30508 7259718 ~ 7261731 (+)
CI01000051_07253002_07255432 PTGFR coding upstream 36619 7252201 ~ 7255620 (+)
CI01000051_07215332_07217167 NA coding upstream 74531 7215332 ~ 7217708 (+)
CI01000051_07337005_07340657 MOB3C, MOB3C.S, MOBKL2C coding downstream 43100 7336853 ~ 7340692 (+)
CI01000051_07345863_07353841 MKNK1 coding downstream 52110 7345863 ~ 7355120 (+)
CI01000051_07367270_07370738 ATP5B coding downstream 73099 7366852 ~ 7370878 (+)
CI01000051_07378590_07389158 ABCB11B, ABCB11 coding downstream 84837 7378590 ~ 7389570 (+)
CI01000051_07391277_07399712 ABCB11B, ABCB11 coding downstream 96881 7390634 ~ 7399786 (+)
G221347 NA non-coding upstream 5584 7286387 ~ 7286655 (+)
G221365 NA non-coding upstream 6470 7285496 ~ 7285769 (+)
G221316 NA non-coding upstream 6945 7284987 ~ 7285294 (+)
G221360 NA non-coding upstream 43741 7248170 ~ 7248498 (+)
G221353 NA non-coding upstream 67072 7224890 ~ 7225167 (+)
G221378 NA non-coding downstream 37904 7331657 ~ 7331868 (+)
G221385 NA non-coding downstream 79630 7373383 ~ 7373734 (+)
G221393 NA non-coding downstream 82220 7375973 ~ 7376205 (+)
G221386 NA non-coding downstream 107422 7401175 ~ 7413007 (+)
G221336 NA non-coding downstream 129170 7422923 ~ 7425419 (+)
CI01000051_06825895_06830637 NA other upstream 459171 6825895 ~ 6830637 (+)
G219803 NA other upstream 2240206 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 2916909 4372658 ~ 4393677 (+)
G218981 NA other upstream 4045366 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 5226156 2060534 ~ 2062355 (+)
G221319 NA other downstream 48288 7342041 ~ 7342546 (+)
CI01000051_08211233_08214513 NA other downstream 811890 8209722 ~ 8214696 (+)
G222727 NA other downstream 1049189 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G106842 NA non-coding NC_048566.1 CM023220.2 4206035 ~ 4206534 (+)
tiger barb (Puntius tetrazona) G81736 NA non-coding NC_056709.1 CM032078.1 14490705 ~ 14493029 (+)