Gene
RNA
| Item | Value |
|---|---|
| gene id | G222727 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 8342942 ~ 8343448 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU252626 | True | 507 | TUCP | 0.56 | 1 | 8342942 | 8343448 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000051_08211233_08214513 | NA | coding | upstream | 128246 | 8209722 ~ 8214696 (+) |
| CI01000051_08171018_08172280 | EFNA2 | coding | upstream | 170398 | 8171018 ~ 8172544 (+) |
| CI01000051_08046197_08069874 | NA | coding | upstream | 273025 | 8045895 ~ 8069917 (+) |
| CI01000051_07978982_07979269 | NA | coding | upstream | 363639 | 7978390 ~ 7979303 (+) |
| CI01000051_07963621_07976671 | PTBP1B, PTBP1 | coding | upstream | 364733 | 7963621 ~ 7978209 (+) |
| CI01000051_08381644_08388611 | NA | coding | downstream | 38143 | 8381591 ~ 8389116 (+) |
| CI01000051_08425890_08429863 | NA | coding | downstream | 81249 | 8424697 ~ 8429965 (+) |
| G222728 | NA | non-coding | upstream | 426 | 8342141 ~ 8342516 (+) |
| G222720 | NA | non-coding | upstream | 5377 | 8337249 ~ 8337565 (+) |
| G222718 | NA | non-coding | upstream | 7272 | 8335208 ~ 8335670 (+) |
| G222716 | NA | non-coding | upstream | 12172 | 8330540 ~ 8330770 (+) |
| G222660 | NA | non-coding | upstream | 88986 | 8253521 ~ 8253956 (+) |
| G222731 | NA | non-coding | downstream | 339 | 8343787 ~ 8344318 (+) |
| G222733 | NA | non-coding | downstream | 2003 | 8345451 ~ 8345677 (+) |
| G222744 | NA | non-coding | downstream | 15710 | 8359158 ~ 8359606 (+) |
| G222745 | NA | non-coding | downstream | 16684 | 8360132 ~ 8360493 (+) |
| G222765 | NA | non-coding | downstream | 46880 | 8390328 ~ 8390594 (+) |
| G221386 | NA | other | upstream | 929935 | 7401175 ~ 7413007 (+) |
| G221319 | NA | other | upstream | 1000396 | 7342041 ~ 7342546 (+) |
| CI01000051_06825895_06830637 | NA | other | upstream | 1509874 | 6825895 ~ 6830637 (+) |
| G219803 | NA | other | upstream | 3290909 | 4914974 ~ 5052033 (+) |
