CI01000053_00432322_00449797


Basic Information

Item Value
gene id CI01000053_00432322_00449797
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 432269 ~ 449797 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_00432322_00449797.mRNA
ACTGGCTGTCATAACACTCTTCACGTACGCTCTAACGCCTTGTGGCTCTGGAAACAAACAGAAGAGGAAAAAAGACCCCATGTTTTACAGTCCAGGAATGCAGAGGCATAGGGAAAGCGGGAGGGTGACAAAGAGAGCCCCTTATAAAGCCAGTCTCCTGTCTCACTATACTCATAATGACTATCTTGGCTGCATTATTGACTGTGGAGACTTACCTCTCAAACCCGAGGAGGTCAGCACCCTCTTCTGCAACATTGAGGACATCTATGAGTTTAACAGTGAGCTTTTGGAAGATCTGGAACGTAGTCCACATGCGGCAGCCATAGCAGAATGCTTTGTGGAGAGGAGTGAAGCTTTTGACATTTACACCATATACTGCATGAATTACCCCAACTCAGTAGCCGTTCTGCGGGACTGCATGAAGAACGAGAGCCTGGTGCGCTTCTTCCAGGAAAGGCAGGCCACCCTGTGTCACTCGTTGCCTCTGGAGACCTACCTGCTGAAACCGGTGCAAAGGATTCTTAAATACCACCTTTTACTGCAGGAACTATCCAAACACTTTGATAAAAGTGATCCAGGGTATGAGGTGGTAGAAGATGCCATTATAACCATGACAGCAGTTGCCTGGTACATCAATGACATGAAGAGGAAACAGGAACATGCAGTCAGACTTCAGGAGATTGAGAGCTTGTTGCTGAACTGGACTGGTCCTGATCTAAGCGGTTTTGGGGAACTGGTTCTTGAAGGTTCCTTCCGGGTTCAGCGTGTGAAAAAGGAAAGAGCATTCTTTCTTTTTGACAAAATGCTTCTCATTGCCAAGAAAAGGCTGGATCATTTCATATACAGTACTCACATCTTTTGCTGTAATCTGCTCTTAGTGGAAAACATGAAGGATCCCCTCTGTTTTAAGGTGTCCGATCAAACAATCCCAAAACAGCAACACATTGTTCAGGCAAGGCAGGTTCTTGGTGACAACTTCTGTCAGTCCCCGCAGTTTGATCAGGAGCCAATAAGAAAGCCGATGCCTTCTCCTCGACTGGATGATGTTCATAATTACCACAGAGGAAGAAGGCAATCAGAACCACCAGAGTTCATCTACACCCCTGAAAAAGCCAGGAAATGCCTTCCACTCCTCCTAGAGGGAAACCTGCCTTACAAGCGTGGAAGGAGACAGTCTGCGCCTGCCAAAGATATAGAAGCTGCATTCCAGCAAGGTGGTGAGTTTGAACTTAAGTTCCTTCACTTTGTTTCATCTTGTTTTGTTATCTTGTTTATCTCTGGATGTGAAAAAGTATGTGAAAAAGCTGGCAGTGAAGGGGAGTTGTGCCCACAGGCTGATAGCATGGGCTCTTCAGGCAGTACCAGTACTCTGGCATCCTCCGTCATTGAAGTTGAATCTGGTCGTGATGATCTGGCTTTATGTCAGGATGAGGATGACATGACCCCACTCCCTCCACCACCAACACTGTCCATTACTGAGGAAATCATGCAGTTCATTAACCAGAGCCGTGCTCGACAAGGCATGGCAGAGTTAACATCTGAAGTGTGCCAGTTGACTCCAGAGTCCCTAGAAGTCCAGCCACTGGAGGCACAACAGTCAGATGAATCCAAACCACTAATATCTGAGGTGGATGAAAATAAACATCAGACCAACGATGCCAAAGTACCAGAGGCAGACAACAAACTGGTAGATGAGTCAGACAAAGATGAGAGCAGCCCTCCATCCTGTGAAGCAAATGTTGCTTCACCAGAGGAGCTTGAGAGAGCATCATCACCATTGCACACCTCCAAAGAAGTGAATCAATCAGAAGAGTTGACTTTACCAGAGCCCAGTCATAGTGAATCATCTAAACCAGAGATGGAGAAGACCATAAGTGAAAAAGATACTAAGGGCTCTGTTAGTAAAAGTGAAGAGCCTCATCTATCTGATAATTTGGACAAAACTGATGATACCGCATGTGAGGCCAGTTCAGCTTGTGCTCACATTGGTACTACATTGAAAGCAACTGAAAACTCTCTTGTCCTCAAAGTAGAACCTGAGCAAAAACTGACCAAAAGTGACAAGCAGATTATTGAGAAGATACGCAGCTATTATGAGGCCGCAGAGGCAGGTGTCGAGGAGAGTCAGATGGCACGAAGGAACAGCTTCTCTAATATTCCTGCAGGATTAGTGAAGGATTCTGTGTCCCGATTCAATGTTTGTGTTCACCAAGATAGTCTAATTGAATCTGAGAGTGGCCTCTCAGACTCAGTTGAAACTGACTCAGGATCTTCATTACTCCCAATATCAGACCAAGCTGACCAGACTTTCAACCATCAGGAATCTGCTGATATAGTCATTCCTCTCTCACATTCCGATGTTAGACAAGAACAAAAAGAAAAATTAGACAGCAAGACTGCAGAAGAAAATGATGTAGAAATGTGTAAATTCAGTCCCTGTATGAAATTGTGGAAGGAGAAAGAAAGAATTGGTGAAGAGTCTCAAAAAAATCCAAAAGCCCCTCTTCCAAAAGAGAACAGCTGTGTTGAACATACAGATGTTTCTGAGAAAAATAAGACATCTATAAATTGCACAACAACCCTAGTACAACAAAAGCAATCTGAACATTCACAGTGCAATCCAGACACTTCAGACCCATCTAATCTGCAGACGACAGAGACAGCGGATACATCTCTTCAATATGGAAGAAGAACCAGAGCTAGAATGTCTTCTAATGGAAGCCTGGACAGCCTTCCTAGTCAGATTAAAGTTGGCCGGTGGTCGCGTCATGGCAAGGTGGTAACATGTAGTCATACCCTTTATGAAGGAATGGCAGAGGTACCAGATTTAGAGTTTCTTGAGGGTGGACCAGTCAACCAATGCTTGGTAGAGAACTCAGAAAAGATTCTTAATAAAGTGCAAATGCTTGCACGCATGTACACTGCCAAGGCAAGCAGTATGAAGGTACCACTACATCAGAAGAAAACACGAGTGAGTAGGGGAGCATGGTCAGTGGAGGGAAAAGGAAGCACTTCACCTAAGTCGCAGCAAGTACAGCTGCACCAGGGGGACATGAGAATACTAAGTCAGCCCACAGGTGAGCTCTTAAGATAATTTAATTATTATCTTGTGTGATGGAAAACATTATTTTAAATATGTTTAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_00432322_00449797.mRNA True 3147 mRNA 0.44 15 432269 449797

Neighbor

gene id symbol gene type direction distance location
CI01000053_00390989_00410148 SUPT5H coding downstream 22121 390799 ~ 410148 (-)
CI01000053_00379771_00382260 NA coding downstream 50009 379621 ~ 382260 (-)
CI01000053_00292771_00295073 TNFAIP1 coding downstream 137196 291914 ~ 295073 (-)
CI01000053_00236043_00262938 SGSM2 coding downstream 168705 235840 ~ 263564 (-)
CI01000053_00116887_00128931 NA coding downstream 302540 116666 ~ 129729 (-)
CI01000053_00454429_00457235 NA coding upstream 4615 454412 ~ 457235 (-)
CI01000053_00496924_00507195 NA coding upstream 46926 496723 ~ 507195 (-)
CI01000053_00629840_00639156 NA coding upstream 179916 629713 ~ 639171 (-)
CI01000053_00647818_00652652 NA coding upstream 197911 647708 ~ 652719 (-)
CI01000053_00656235_00664346 MAP6B coding upstream 205654 655451 ~ 664346 (-)
G225467 NA non-coding downstream 151310 272956 ~ 280959 (-)
G225534 NA non-coding downstream 201801 230259 ~ 230468 (-)
G225466 NA non-coding downstream 248673 160717 ~ 183596 (-)
G225604 NA non-coding upstream 41126 490923 ~ 491132 (-)
G225606 NA non-coding upstream 43256 493053 ~ 493289 (-)
G225571 NA non-coding upstream 74697 524494 ~ 525945 (-)
G225570 NA non-coding upstream 76320 526117 ~ 527530 (-)
G225620 NA non-coding upstream 102679 552476 ~ 556059 (-)
G225574 NA other upstream 93850 543647 ~ 546868 (-)
G225812 NA other upstream 1009798 1459595 ~ 1466732 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 1767651 2225210 ~ 2226481 (-)
G226826 NA other upstream 2116095 2565892 ~ 2567072 (-)
G226963 NA other upstream 2546920 2996717 ~ 2997268 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location