XLOC_009795


Basic Information

Item Value
gene id XLOC_009795
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14897971 ~ 14898281 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021697
CTGGCGTTTCAGCTAGCATTTGTGAAAttccctccttccacactataccgctgatTAATGGCagtgtgaccacacacacacaaacacacacagtcatgtGCCGCAGCGTACGgtgtgtctgagctccagcagtcagcgagCCTGCTGAGCACAAAACCCCTGAGAGCAGTGCACGTCCATCAGTTTATCAAGTATGTACCACTGAATTTCATCTCACTATGGTTgttaaaagtgatatttaattaatcttgtctctatctaatgactcttctgtcttttgaatctatcaggtaatgtgtcacagctTCAGT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021697 True 311 lncRNA 0.44 1 14897971 14898281

Neighbor

gene id symbol gene type direction distance location
XLOC_009790 deptor coding upstream 222064 14588141 ~ 14675907 (+)
XLOC_009793 NA coding upstream 256573 14640999 ~ 14641398 (+)
XLOC_009792 NA coding upstream 259681 14638045 ~ 14638290 (+)
XLOC_009791 NA coding upstream 275206 14622524 ~ 14622765 (+)
XLOC_009789 BX005402.1 coding upstream 389771 14479551 ~ 14508200 (+)
XLOC_009796 mtbp coding downstream 199482 15097763 ~ 15147228 (+)
XLOC_009797 NA coding downstream 433581 15331862 ~ 15332147 (+)
XLOC_009798 NA coding downstream 471411 15369692 ~ 15371261 (+)
XLOC_009799 CT573793.1 coding downstream 811130 15709411 ~ 15710083 (+)
XLOC_009800 CT573799.1 coding downstream 967943 15866224 ~ 15867165 (+)
XLOC_009788 BX324006.1 non-coding upstream 413604 14479160 ~ 14484367 (+)
XLOC_009801 NA non-coding downstream 1101466 15999747 ~ 16000742 (+)

Expression


Co-expression Network