G228558


Basic Information

Item Value
gene id G228558
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5493392 ~ 5493639 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU259376
TCTGGGTTTGGCGGTTGCCAGGAGAACGGTACTTGCCTGACTGCATTGTGCCAAGTGTAAAGTTTGGTGGAGGGGGGATTATGGTGTGGGGTTGTTTTTCAGGGGTTTGGCTTGGCCCCTTAGTTCCAGTGAAAGGAACTCTTAATGCTTTAGCATACCAAGACATTTTGGACAATTTCATGCTCCCAACTTTGTGGGAACAGTTTAGGGATGGCCCCTACCTGTTCCAACATGACTGCGCACCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259376 True 248 lncRNA 0.50 1 5493392 5493639

Neighbor

gene id symbol gene type direction distance location
CI01000053_05452721_05459354 GGT1A, GGT1B, GGT1 coding downstream 34038 5452264 ~ 5459354 (-)
CI01000053_05416830_05423957 ASPHD2 coding downstream 68695 5415744 ~ 5424697 (-)
CI01000053_05390157_05393405 NA coding downstream 99987 5390023 ~ 5393405 (-)
CI01000053_05378213_05386176 NA coding downstream 106779 5377310 ~ 5386613 (-)
CI01000053_05369264_05372918 UNC119B, UNC119.1 coding downstream 120474 5368964 ~ 5372918 (-)
CI01000053_05521820_05524159 GPX8 coding upstream 27976 5521615 ~ 5524159 (-)
CI01000053_05552919_05561938 ANAPC5 coding upstream 58596 5552169 ~ 5562961 (-)
CI01000053_05577140_05583728 KDM2B, KDM2BA coding upstream 83407 5577046 ~ 5584765 (-)
CI01000053_05621226_05622308 APJA, APLNRA, APLNR coding upstream 126770 5620409 ~ 5622498 (-)
CI01000053_05675892_05686424 NA coding upstream 181340 5674979 ~ 5686424 (-)
G228557 NA non-coding downstream 1673 5491417 ~ 5491719 (-)
G228554 NA non-coding downstream 6687 5486450 ~ 5486705 (-)
G228544 NA non-coding downstream 7256 5471332 ~ 5486136 (-)
G228533 NA non-coding downstream 62414 5430510 ~ 5430978 (-)
G228463 NA non-coding downstream 191738 5256104 ~ 5301654 (-)
G228559 NA non-coding upstream 1574 5495213 ~ 5495423 (-)
G228563 NA non-coding upstream 9316 5502955 ~ 5503233 (-)
G228576 NA non-coding upstream 24664 5518303 ~ 5518529 (-)
G228583 NA non-coding upstream 39571 5533210 ~ 5533522 (-)
G228584 NA non-coding upstream 43966 5537605 ~ 5537824 (-)
G227604 NA other downstream 1405652 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 1940421 3550333 ~ 3552847 (-)
G226963 NA other downstream 2496124 2996717 ~ 2997268 (-)
G226826 NA other downstream 2926320 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 3255996 2225210 ~ 2226481 (-)
G228651 NA other upstream 290844 5784483 ~ 5787690 (-)
G228750 NA other upstream 437953 5931592 ~ 5932241 (-)

Expression


Co-expression Network