XLOC_009857 (skap2)


Basic Information

Item Value
gene id XLOC_009857
gene name skap2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20934353 ~ 20977706 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019670
GTGAGCACCCAAATGCGCCTGCTGGAGATAACGTGATAAATAACAGTGTCTAATTTGAATAGTGGTTTATTTAGTTTAGGCAGTCGTCTCTTCCGTATTTCAGTCGAGTCCACTTAACTTCCGCGTTTCGAAGGCTATCTTGCTGGGTCAAGCGATTTATCAGAATGCGGTCTGTACCGGAAGACTTCACGACACTCATTTCAGATCTGGAAACATTCTTGACGGATGTCCTTAAAGGAGAAAATTTAAGCAAGAAAGCAAAAGAGAAAAAGGATGCCTTCATCAAGCGTATTAAAGATGTGAAAACAAGCTACGCTCAGGAATTTAAGGACAGACGAGATGAAGAGTTTCCGGAGCCTGATGAAGCTGACACCAATGATGGTGGATCGCTGCACTCAGAGCAGACTGATAGAGATGATGAAAACGCATACGACGGAGTCCAACAATCTCCTCCAGTGGCAGCTCAGGACCTTCAAGCTGTTTTAAAGAGTGGCTACCTGGAAAAACGGAGAAAGGATCATAGCTTCTTTGGCAATGAGTGGCAGAAGAGATGGTGTGCCTTGAACAACAGCATATTCTACTACTATGGCAGTGAAAAAGACAAACAGCAAAAGGGAGAGTTTAATATTGTTGGGTACACTGTCAAAATGAACAACACTCTGCGGAAAGATGCAAAGCGAGATTGCTGCTTTGAGGTTTCAGCTCCAGACAAGCGTGTATATCAGTTCTGTGCTGCGTCTGAGAAAGAGGCAAAAGAGTGGGTGGAGCACATTGATTTTCTGATTAAAGACTTGGGTGGAATCATTCCTGAAGACGAAGAAGAGTATGATGACTGCTTAAGTATGAGCCAGTCAGAAGTGGCCATACTTCCCGATGATGACATCTATGAAGAACTACCTGAGGAAGACGTACCCCAGCCTTCAAAACCAAAAGTGACCCTGGTCAACAAACCCCCACCACCAGCCACCCCTGTGACAGCAGCAGTCAACAAAAGCACAGACTATGCAAACTACTTCCAGGGCTTATGGGATTGCATTGGAGATCAGCCCGATGAGCTGTCTTTTAAAAGAGGAGACACCATCTACATTCTCAGCAAGGAGTACGACATGTTCGGCTGGTGGGTGGGAGAGATGAAAGGGGTCATCGGAATTGTGCCCAAGGAGTATCTTTTGGAGCTGTATGTGCTATGAAGGGCTGAGggTCCTTTGATGGCCTGCTGTTGCAACTTTATGATTCACAAGCCACTGCCTCTTTCTGTGTGTTTctgttatattattctatttaatACGTAAAGCAAACTGCCTGTCAAGAAGCATCAGCAATTCTGAAGTATGTACAATGAAGAATGAGACTATTTAATTTTCATGTGCTCAGGTATTTAATAGCAAtgactgaattattattatactattttttgtctttaaaaagctTCAAAGTTGCTTCAAAAGCATAAAACTGAAAGAAATAAAGCTAGAGTGCTGATATCA
>TCONS_00019671
GGTACACTGTCAAAATGAACAACACTCTGCGGAAAGATGCAAAGCGAGATTGCTGCTTTGAGGTTTCAGCTCCAGACAAGCGTGTATATCAGTTCTGTGCTGCGTCTGAGAAAGAGGCAAAAGAGTGGGTGGAGCACATTGATTTTCTGATTAAAGACTTGGGTGGAATCATTCCTGAAGACGAAGAAGAGTATGATGACTGCTTAAGTATGAGCCAGTCAGAAGTGGCCATACTTCCCGATGATGACATCTATGAAGAACTACCTGAGGAAGACGTACCCCAGCCTTCAAAACCAAAAGTGACCCTGGTCAACAAACCCCCACCACCAGCCACCCCTGTGACAGCAGCAGTCAACAAAAGCACAGACTATGCAAACTACTTCCAGGGCTTATGGGATTGCATTGGAGATCAGCCCGATGAGCTGTCTTTTAAAAGAGGAGACACCATCTACATTCTCAGCAAGGAGTACGACATGTTCGGCTGGTGGGTGGGAGAGATGAAAGGGGTCATCGGAATTGTGCCCAAGGAGTATCTTTTGGAGCTGTATGTGCTATGAAGGGCTGAGagaaatggataagAAGATTAATTTTCGGAAAgggTCCTTTGATGGCCTGCTGTTGCAACTTTATGATTCACAAGCCACTGCCTCTTTCTGTGTGTTTctgttatattattctatttaatACGTAAAGCAAACTGCCTGTCAAGAAGCATCAGCAATTCTGAAGTATGTACAATGAAGAATGAGACTATTTAATTTTCATGTGCTCAGGTATTTAATAGCAAtgactgaattattattatactattttttgtctttaaaaagctTCAAAGTTGCTTCAAAAGCATAAAACTGAAAGAAATAAAGCTAGAGTGCTGATATCATCACA

Function

symbol description
skap2 Predicted to enable kinase activity. Predicted to act upstream of or within B cell activation and phosphorylation. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SKAP2 (src kinase associated phosphoprotein 2).

GO:

id name namespace
GO:0042113 B cell activation biological_process
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko05135 Yersinia infection

ZFIN:

id description
ZDB-GENE-030616-438 Predicted to enable kinase activity. Predicted to act upstream of or within B cell activation and phosphorylation. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SKAP2 (src kinase associated phosphoprotein 2).

Ensembl:

ensembl_id ENSDARG00000000906

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019670 False 1487 mRNA 0.43 13 20934353 20977701
TCONS_00019671 True 891 mRNA 0.42 8 20947439 20977706

Neighbor

gene id symbol gene type direction distance location
XLOC_009856 hoxa2b coding upstream 5170 20926673 ~ 20929183 (+)
XLOC_009855 hoxa9b coding upstream 16769 20915319 ~ 20917584 (+)
XLOC_009854 mir196d coding upstream 20869 20913413 ~ 20913484 (+)
XLOC_009853 hoxa10b coding upstream 21350 20910186 ~ 20913003 (+)
XLOC_009852 hoxa11b coding upstream 26975 20904754 ~ 20907378 (+)
XLOC_009858 BX571678.1 coding downstream 39114 21016820 ~ 21055136 (+)
XLOC_009859 NA coding downstream 163342 21141048 ~ 21142516 (+)
XLOC_009860 osbpl3b coding downstream 264785 21242491 ~ 21418775 (+)
XLOC_009861 gsdmeb coding downstream 447408 21425114 ~ 21441226 (+)
XLOC_009862 NA coding downstream 656681 21634387 ~ 21634836 (+)
XLOC_009848 NA non-coding upstream 238836 20684940 ~ 20695517 (+)
XLOC_009847 NA non-coding upstream 402581 20530125 ~ 20531772 (+)
XLOC_009840 CU855688.1 non-coding upstream 1125236 19805021 ~ 19809117 (+)
XLOC_009838 BX005389.1 non-coding upstream 1229815 19704424 ~ 19704538 (+)
XLOC_009866 NA non-coding downstream 896689 21874395 ~ 21877421 (+)
XLOC_009868 NA non-coding downstream 1044585 22022291 ~ 22113936 (+)
XLOC_009869 NA non-coding downstream 1346060 22323766 ~ 22327502 (+)

Expression


Co-expression Network