XLOC_009859


Basic Information

Item Value
gene id XLOC_009859
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21141048 ~ 21142516 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021921
aaagagtttttgatcaaataaatgcatctttTGTGAGCAGATTagacttctttaaaaaaacattaaaagtgatgtctaataaatgtgtttttatttgaagcAGCCAACCATGGATCACAGCAATAACTTGCATcacagtgttatttatttacaaaacagccTGAGGAAAATGACCAGCAATCAGTCTGGCATGATAAGACCCTGTATATTCCTTACAAACGGCACAGTAGTTCATATATAAACATATGGCATTCGATGGATATGTGATCCACTGAAATACAGGATGACAATATCTTCATAAGAGGCACATTGAGGCACCAAGTATGATATACCAAAATTAAATGTTAGCTGATAAAATATAATAGCCACTTCTGACCTTCCTTTTTAgggtatgatttttttttttttttttttggctctctCTTTCACTTTTAATGCAAATTCATAATAAACGCAAAATGAATAAGGCAAACAGACTGCAATGAAATAGCACAATCTGACTGTATCAATAGAATGAATAGCAAAACTATGACAACAGAAAGCTGCTGCTGTCAAAACTATACGCAGCATGCATTTTATGGCATTCATAATgcattcaaaaatatataatgttttacGTACTCAATTTTAACAAACATACTGTAAACAGTCAAACCTACATGCCGAATAACAATGTTTTGCATGCAACAAATTAAGGTTCAACTCTGATGACTTTGGTACATTCATTGTTGTGTAATTTGctgttacactctcagaaataaaggtaagacAGGTGtcacttttcaaaaggtacatatttgtacctaaggTCCATAATATTACCTCAgggatacatattagtacctaaaaagtataaaATTGTACCCCTTAAatgttttaggtactaatatatacttttgaagtACCCGTATAGaccctttaaaaacaaatgtgtaccttttgaaaaggtatcaccctagtgacagctctcatacctttatttctgaaagtgtaccaTGAGAACTGTTCATATATAATCATGTACAAGATAATCAACATATAATGTATGTTTCTTGTGGTGAAGGTAGttgtacactgaaaaataaagatgtctgcaaaattgttgcaaacaatttaaacgCGTTGAttcaaacaaactaaatttaataatgttcaacttaatttgtttgtttaaattctgccCAAATGATTTGTTTACAACCATTTAACTTAAACAAATTAGTAATTCAAGGaataatttttgataatttttttagtaaataggTTTTCAAGGGTCCCATGGGAATGCAAATGTTTTAGGAAGAgctaaaaaagaaaactaatatgaaaatactaaaataaataaatacattaaaagtaaatgataaaacgtgaaataaaaataagtacaaaatatacagtgctcagcataattgag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021921 True 1417 lncRNA 0.30 2 21141048 21142516

Neighbor

gene id symbol gene type direction distance location
XLOC_009858 BX571678.1 coding upstream 85912 21016820 ~ 21055136 (+)
XLOC_009857 skap2 coding upstream 163342 20934353 ~ 20977706 (+)
XLOC_009856 hoxa2b coding upstream 211865 20926673 ~ 20929183 (+)
XLOC_009855 hoxa9b coding upstream 223464 20915319 ~ 20917584 (+)
XLOC_009854 mir196d coding upstream 227564 20913413 ~ 20913484 (+)
XLOC_009860 osbpl3b coding downstream 99975 21242491 ~ 21418775 (+)
XLOC_009861 gsdmeb coding downstream 282598 21425114 ~ 21441226 (+)
XLOC_009862 NA coding downstream 491871 21634387 ~ 21634836 (+)
XLOC_009863 si:ch211-154o6.3 coding downstream 556464 21698980 ~ 21745336 (+)
XLOC_009864 trim108 coding downstream 647187 21789703 ~ 21805974 (+)
XLOC_009848 NA non-coding upstream 445531 20684940 ~ 20695517 (+)
XLOC_009847 NA non-coding upstream 609276 20530125 ~ 20531772 (+)
XLOC_009840 CU855688.1 non-coding upstream 1331931 19805021 ~ 19809117 (+)
XLOC_009838 BX005389.1 non-coding upstream 1436510 19704424 ~ 19704538 (+)
XLOC_009866 NA non-coding downstream 731879 21874395 ~ 21877421 (+)
XLOC_009868 NA non-coding downstream 879775 22022291 ~ 22113936 (+)
XLOC_009869 NA non-coding downstream 1181250 22323766 ~ 22327502 (+)
XLOC_009870 NA non-coding downstream 1185454 22327970 ~ 22329028 (+)
XLOC_009837 BX005389.4 non-coding upstream 1425838 19686713 ~ 19715210 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G98521 NA non-coding CI01000016 null 8419344 ~ 8420716 (-)
eurasian perch (Perca fluviatilis) G83250 NA non-coding NC_053119.1 CM020916.1 8263684 ~ 8264166 (+)