CI01000054_02985381_02988122


Basic Information

Item Value
gene id CI01000054_02985381_02988122
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2985360 ~ 2988161 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02985381_02988122.mRNA
AGTGACTTGTTTTCGTCGGTCGCTGACTTCACCACACAAATGGACAGATCAGTCGCTAACCCTTCTGTGTGGGACACACAAAAAGTGTATAAACACCACGAGCAACAAAATGTTGCCCAAACACGCGCAAAATACAGAGAGGGAAGACGCCCCAAAGCTGTTAAGGTATACACCATCAACTTGGAGTCTCGGTACCTGCTAGTTCAAGGAGTGCCCGCTATTGGAGTGATGACAGAGCTGGTGCAGCTCTTTGCTCTCTATGGAGTGATCGAGGAGTACAGGGCACTTGATGAATACCCAGCAGAGCAGTTCACTGAAGTCTACTTACTTAAATTCCAGAAGCTGACAAGTGCAAGGGTAGCTAAACGGCATACTGATGAAAAGAGCTTCTTTGGGGGTCAGCTGCATGTCTGCTATGCCCCCGAGTATGAAACTGTGGAAGAGACGAGGCAGAAGTTACAGGACAGAAGGAGATATGTTAACAGAGCAAGCCAAAATACAGCAAAACAAAATGATCAGCAACAGGAAGTAAGCACAGAGACATCAAGCACGGACACACGAGCAGCTGCAGCACCTGAGATCCAGAAAGACTCTGCAAGCGCCAGAAGGGAGAATGTAAAGTCTGACTACTTGGGCTTTCCTGTGCAGCCTTTGCCGCCAACGGAGGATGTTTCTTATAGACTTCCCAATTTTACACAGCCATTTCAATTGCAGTGGACCACTGAAACAACATTACCTACAGAGGATAAGATGGGCTCACTACATAATTCCATCCCTCCTGTCCCACAAACTTCAAAGCAGAGTGCATCATCCTCATCTTTAAGTGTTAAAGAGAAGGATTTGAGTAAAAGGCAGAAGAACCTGTCACCACATGTTAGATTTATGCCAAGGACTACACAACTAGAAAGTAGAAAAAGAAAATTAGATGGAACAGTGTTCTTTTTGAATGAAACTGAGACTCTAATTGGCCCAAAATTACCAGAACTGCCCAAGGTGGACATGGAGGATCATTCATTAAATGTAACCGCCAATTTGATCCGTCAAACTATGACTAAGGTCGCATCTGTTCCAGAGGTCAAACCTGAACAAGTGAAGACCACTACTGCAAAGCCACGCAGAAGAATTTAATAAGACAATTGTGCGATTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02985381_02988122.mRNA True 1149 mRNA 0.45 5 2985360 2988161

Neighbor

gene id symbol gene type direction distance location
CI01000054_02868603_02911589 CDK6 coding downstream 73555 2868444 ~ 2911805 (-)
CI01000054_02857402_02860451 NA coding downstream 124909 2857402 ~ 2860573 (-)
CI01000054_02840361_02849268 NA coding downstream 136092 2839832 ~ 2849268 (-)
CI01000054_02825786_02828251 NA coding downstream 157109 2825753 ~ 2828251 (-)
CI01000054_02709494_02814598 VPS50 coding downstream 170460 2709489 ~ 2814900 (-)
CI01000054_02999099_03015534 NA coding upstream 10619 2998780 ~ 3015534 (-)
CI01000054_03018229_03030984 NA coding upstream 29915 3018076 ~ 3030984 (-)
CI01000054_03032517_03047094 ZMYM4 coding upstream 43665 3031826 ~ 3047094 (-)
CI01000054_03049995_03054032 NA coding upstream 61703 3049864 ~ 3054032 (-)
CI01000054_03082593_03087260 SFPQ coding upstream 94187 3082348 ~ 3087545 (-)
G230922 NA non-coding downstream 5906 2918027 ~ 2979454 (-)
G231001 NA non-coding downstream 67563 2917235 ~ 2917797 (-)
G230913 NA non-coding downstream 118720 2863400 ~ 2866640 (-)
G230999 NA non-coding downstream 289400 2695624 ~ 2695960 (-)
G230997 NA non-coding downstream 290922 2694209 ~ 2694438 (-)
G231003 NA non-coding upstream 68567 3056728 ~ 3056940 (-)
G231004 NA non-coding upstream 101823 3089984 ~ 3090270 (-)
G231010 NA non-coding upstream 128014 3116175 ~ 3116434 (-)
G231016 NA non-coding upstream 151159 3139320 ~ 3139613 (-)
G231096 NA non-coding upstream 223895 3212056 ~ 3258021 (-)
G230923 NA other downstream 147678 2837237 ~ 2837682 (-)
G230178 NA other downstream 1755225 1185533 ~ 1230135 (-)
G230908 NA other upstream 69487 3057648 ~ 3063343 (-)
G231645 NA other upstream 993686 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 1681990 4670151 ~ 4681361 (-)
G232274 NA other upstream 2218038 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 3639921 6628082 ~ 6642160 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014228 rbm48 coding NC_007130.7 CM002903.2 40177246 ~ 40182642 (+)