XLOC_009864 (trim108)


Basic Information

Item Value
gene id XLOC_009864
gene name trim108
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21789703 ~ 21805974 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019687
CTGTTGGTTTAGGTTATTCTGCATGGCCTCAGCTGCATTCCTGTACCGTCTCCAGCTGTTCCACTTCCTATTCCTGCTTTCTCAAAAACAGCTGCGCCTCCTCCAAACACACTAGAGGTCTCCTCTGAGGGGATGGAGACAAACATAAAGGACACGTCTTTAAACCAGTGAAAGAAGCTGCAGAGATAAACAAGGGGAAGCTAAAGACTGCTTTGGGTTTTCTTGCCAAAGAAAATGGACAACTGGATTACATGATACAACAACAGACCACAGAGATCACCAAAACTGAGgatAAATCCAAAACCTTATCAGCCCAGATCTCTGATCATTTTGAAGAAATGCACCAGCTCTTACGAAAAATAGAGGATGAGGTGAAAAAACTgttggaggaggaggagaagaaagtTACAGAAGCCTTGCAGACTAATCAGTCTGTGATAAATCAAAGGTTCATGGAGAACAAAGAGAAGGAGATTATTCTGCAGTCAGCTTTGGAGATTGATCAACCTGATCACTTTCTACAGTGGTGGAATGAAAAAGGATTTCCGATGACAAATAACATGAAGCAAAAAGCTGGTGTGAAGCCATCAAATACC
>TCONS_00019688
AGTATGTTCTTGCCTAACAGACCATATACATCAATGGTAAGCTATTTTTATTCAACCTTCAGATATAGCTCAATTTCCAAACAATTGACACTTGTGACTGCATTTGTGCTCCTGAGTCACTATTGTTTTCCATCATGTTATTCACTTTCCTGTTGTCTTTGGCAAGAAAAACCATTGTCCATCCTTCGGCACGTCCTTTAAGATAAAGACTCCAACAGACTTCCGTAAAAAGCTTTTAATTGCTGAGGGGAAGCTAAAGACTGCTTTGGGTTTTCTTGCCAAAGAAAATGGACAACTGGATTACATGATACAACAACAGACCACAGAGATCACCAAAACTGAGgatAAATCCAAAACCTTATCAGCCCAGATCTCTGATCATTTTGAAGAAATGCACCAGCTCTTACGAAAAATAGAGGATGAGGTGAAAAAACTgttggaggaggaggagaagaaagtTACAGAAGCCTTGCAGACTAATCAGTCTGTGATAAATCAAAGGTTCATGGAGAACAAAGAGAAGGAGATTATTCTGCAGTCAGCTTTGGAGATTGATCAACCTGATCACTTTCTACAGTGGTGGAATGAAAAAGGATTTCCGATGACAAATAACATGAAGCAAAAAGCTGGTGTGAAGCCATCAAATACCCAGTATATGTCAAGAGTGAAAGATCTCACAGTTCTTCCTGACTCCCTCTTTCTTGGTCCTCATGAAACTCACCTGCAGTTCTTTGTGTGGAAGCAGATGCTGG
>TCONS_00019689
AAAGCAGAATTTGACAGAAAGGAGCTGATTTTAAAGAGAGAAAACATTCAGTTCAAAGCTCAAAACACGGTCTTGACCAGAAGGAAAGCTAAAATGCATTCCCCTTTGTCTTTGGAGATCAAGTGCTCCGTGTGTCTGAGTGATTTTACGGATCCGGTGACTCTCTCTTGTGAGCATTCGTTTTGTCGTCAATGCATTACTGGCCATATGCAGGCCAGCCTGGGACCAAGTGCCTGTCCAGAATGCCAAAAACCTTACAACGAAAAAGACCTGAAATCCAGCCGTTTACTGAGAAACATGACCTCGACAGTACGTGGGCACCTTGCAGAGCAGAAATCAGACAGATCCACACCTCAAGAAGGAACGCAAACATTGAAGCTTGCAGATATGGAGAAGATGCTGATGTGTTCTGAACACGACGAGAAGCTCAAACTGTTCTGTGAGACTGATCAGAAGCTGGTGTGTGTCATCTGCAGGGATGGAGACAAACATAAAGGACACGTCTTTAAACCAGTGAAAGAAGCTGCAGAGATAAACAAGGGGAAGCTAAAGACTGCTTTGGGTTTTCTTGCCAAAGAAAATGGACAACTGGATTACATGATACAACAACAGACCACAGAGATCACCAAAACTGAGgatAAATCCAAAACCTTATCAGCCCAGATCTCTGATCATTTTGAAGAAATGCACCAGCTCTTACGAAAAATAGAGGATGAGGTGAAAAAACTgttggaggaggaggagaagaaagtTACAGAAGCCTTGCAGACTAATCAGTCTGTGATAAATCAAAGGTTCATGGAGAACAAAGAGAAGGAGATTATTCTGCAGTCAGCTTTGGAGATTGATCAACCTGATCACTTTCTACAGTGGTGGAATGAAAAAGGATTTCCGATGACAAATAACATGAAGCAAAAAGCTGGTGTGAAGCCATCAAATACCCAGTATATGTCAAGAGTGAAAGATCTCACAGTTCTTCCTGACTCCCTCTTTCTTGGTCCTCATGAAACTCACCTGCAGTTCTTTGTGTGGAAGCAGATGCTGGGATCCATCAAACGAGttCCTGAGAGTTTAACCCTGAAAAATCCTGGAGAGTCATATTTAAAAGTGTCTCCAGGGGGCACCAGAATCCGGCAAGCTGACAGAGCGACTGGTCTGTATAAAGACTTCAACCCTGGTACAGTTTCAGTGGAGAACTTTCAGTCTGGTCAGCACTACTGGGAGGTAGAGGTCGGAGAAAAGCCAGACTGGACCGTGGGAATCAAGATGGGCACTGACAAACAGCAGAGTGACATCCTGCTCCATCTTAAACACCATAAAGGCTACGTTCTGTCATGTGATGGAAAAGACTCTCCATTAAGCATTCGAGAAAAACCTCAGAAAATCGGCTTGTATCTGGACTGTGAGAGAAAGCAGGTGTTGTTCTATAATGCTGACAACATGACTCGGCTGGTGCAGAAAAACTACAGCTCTAAGCAGCCTTGCTGTGTTAGTCTGGTGCCAGGAGTTTATCTGGATGGTAAAAACAGCGACCCGCTCACTGTCTGCTCATATGAGTTCAACACTGGGAAACGTTAAATTAATATAGACATCACACTGTTACTAAATATGTGATGTAAATCAGTCATTCACTGCAATGATGATATAAAAGGAGAATAATTGAAATGCAATGAacaattgtttaaattaattttagcagccAGGATGAAAAAATAAAGTTGCTTCTTTGCTTCTAATTCAGCCAAATATTA
>TCONS_00019690
AGACTGATCAGAAGCTGGTGTGTGTCATCTGCAGGGATGGAGACAAACATAAAGGACACGTCTTTAAACCAGTGAAAGAAGCTGCAGAGATAAACAAGGGGAAGCTAAAGACTGCTTTGGGTTTTCTTGCCAAAGAAAATGGACAACTGGATTACATGATACAACAACAGACCACAGAGATCACCAAAACTGAGGTATCATAACATCTAAATAAGTTGGAAAACACTGACTTTCATGATAGCACAAGTCTTGgccaatgtattattttattttaaagtacattaaaaacacaattaatgcaTACACTGACTTGAATACTTTAGTTCAATGAGCATGTTTCAAATGTCtaaattgtaaattaatttgtttcatttactCAGCTCTTGTTTGACTAAAGTCCGGCTCAcactgtatgatttttaaaaattgtttatgaTTGTAGCTAGACTGCATGAACATGAtccccatgtcacactgtaagatgtcAGATGATATAATATTAGACTGACTGAcagcagacctggtgcagtgcaatctgagctgcatccaatgctttt

Function

symbol description
trim108 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-670 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000061762

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019687 False 596 mRNA 0.42 5 21789703 21804638
TCONS_00019688 False 752 mRNA 0.40 5 21790870 21804845
TCONS_00019689 False 1751 mRNA 0.43 6 21801277 21805974
TCONS_00019690 True 557 lncRNA 0.36 2 21801719 21802475

Neighbor

gene id symbol gene type direction distance location
XLOC_009863 si:ch211-154o6.3 coding upstream 44367 21698980 ~ 21745336 (+)
XLOC_009862 NA coding upstream 154867 21634387 ~ 21634836 (+)
XLOC_009861 gsdmeb coding upstream 348477 21425114 ~ 21441226 (+)
XLOC_009860 osbpl3b coding upstream 370928 21242491 ~ 21418775 (+)
XLOC_009859 NA coding upstream 647187 21141048 ~ 21142516 (+)
XLOC_009865 zmp:0000000608 coding downstream 61187 21867161 ~ 21867872 (+)
XLOC_009866 NA coding downstream 68421 21874395 ~ 21877421 (+)
XLOC_009867 znf687a coding downstream 111699 21917673 ~ 21938044 (+)
XLOC_009868 NA coding downstream 216317 22022291 ~ 22113936 (+)
XLOC_009869 NA coding downstream 517792 22323766 ~ 22327502 (+)
XLOC_009854 mir196d non-coding upstream 876219 20913413 ~ 20913484 (+)
XLOC_009848 NA non-coding upstream 1094186 20684940 ~ 20695517 (+)
XLOC_009847 NA non-coding upstream 1257931 20530125 ~ 20531772 (+)
XLOC_009870 NA non-coding downstream 521996 22327970 ~ 22329028 (+)
XLOC_009872 NA non-coding downstream 769169 22575143 ~ 22579326 (+)

Expression


Co-expression Network