CI01000054_05292456_05317677


Basic Information

Item Value
gene id CI01000054_05292456_05317677
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5292299 ~ 5318991 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05292456_05317677.mRNA
ACAGCTTGAGAAGACTACTCTCCAGAATTTGCCAGTCTTCTGAAACATGATTTCTTGGGAATTAATATCAATATGATGTACCAGCAAAGATGTCTTGAGAATGACAGAATCAGCCATGTTAAACAATGTCACTTCCACAAAGAAAGACCCATTTCGCACAATCAAATGCTCTCTAGAATTTAAAGCGTCCCGCTCCCTACATTACAAACAGACGCTGAAGCTGCAGCTAAAATTGGTCACTTTTTCACACATTTACTGTTTTCTACATGGCAAATGGCATATAAAGCACTATATAAGTGATAGGGAATGATTCAGACAATGTAAATATACTTTCCATTGGGGTAAATGAAGTCTGGTTTCACATTAGTGTCATGCGTACTGCTGCAGCGCGCACATAATCTGCTCTTGTCCAGAGACATGAGTGTGCATCATATGTGAGAGTCGGCGCAGACCAGAAAACGTATCGGACCCATTTGAATTCTGCACAGAATGCTATATTTTAAAACGAAATGAAGGAGATTAGGAGGAGAAACGGTTAGAGATTAGGAGGAAACTGAGGCTTTACTGAGCTCAACAGCTCTGGGAGTCTGGCCGAGCTGTGATATAAACTAAACGCTATTGGCTATTTTAAAAAAGGGGAGAAGCTGTTCGATACGTCCCGCCCTGTCTTACTGTTTCAGTGGAAAGTAAGTCATTGAATAGCGCTGCACGTTTCAAGGCACTTCAGTGTGCCTTTAATATTTTTATGGAAACTACAATACTTTTTTCCAGGATTCTTTGATGAATAGAAAGTTCAAAAGCACAGTCTTTATTTGAAACAGATTTTTTACTTTCACATTCTTACTGTCACTTTTGATCAATTTAATTCCACCTTGCTGAATAAAAGTATTAATTTAACAAAAATCTTACTGACCTCAATTTTTTTGAATGGTAGTGTAAAGGGGGCCACAGAGTAAAAGTGAAATAGCTTTACTTAATGGAATTTAAGTGAAAGCCCCCACAGAATAGATTATCATCATTATAATCAGAGGCTGAAGTTCACGGTTAGTATCACAACATAACCATTTGATAATTACTGTTACCTTGACACCCCTTTCAAGAGTAGATAAGGGGCAGTGTGTAATCCTCTCTTTCACATTGGCACTGAAAGTATCATCACTCACTTGTATATTTCTCAGAGTGGAGCAGACCTCCGGGGGCTCTTAAAGAAGAAAGCGATGCTTTAAGGGTTCAGTCACTCTGCATTGCCTGACACCAGACTGATATATTCCCAGCCGCTCAGGCTCTCCGTCAGCAACAGCTAATGGAATCAACATGGGTGACGGATATACCAAGGAAAATAAGTTGTCAAAGAGACCTGGGCCTTTCATCAATGAGTCTGCTATGTTTGATGCTGCCATGACCCTCCTGAAGTTTCACAGAAGGTTTATCATCTGTAGACTGAAATTGCGGTTTGACGTAAGGAATTGCGCAGAGCTGTTTGTGAAGGTTTTTGAGGCAGTGGAGAAAGAGGGAAGGTGGTCAAAAAGAGCATCTTACGTGCTTGTAGATATAATCTTCTGGTTACATATAACTGCTTTGGGAGTCAGGTTGGCCAGACTTCTGCTTACATCCAGATCAGGTGGTGGCAGAAGACTAGGTGTGATTGAGGACACAGGCTTCAGCAGAGTCATTTCCTCTCACTACAGCATATCCTGTCATCCACTTCTGGAACTTCAGAAGATTCCCGAGATCATGGAAAGTGAGGGTCAAGGACACAGTAAGGATGCCAAGTCTGTTGATGAGTTTGTGAGATTCACTGTTCTTCAGGGCATTTTCTGGGTGGTGTGGTGGAGCGGTTACCCTTCTGTTCGCTTCTCTCTTCCCTCTGCTCTTCCTCCTTCACTCACAAGACATTCCCTGAATGCTAATTCAATGCTTCTCTCTCTCATCTGTGAACTACAGATGCAAACAAGCAAACAGACGACAGCTTGTTGGGATTCTCCAAGACAAGGTCCAACTGTTTCACTTGCGGGATCACATTCTCAGTTGTTTGGCACATTACACACTTCCTTTGATCAGACCTGTGAAAGGCCTTACAGTGGCATTACACATCCAATGCCACGCAAAAAGGCTCAATCCATGTTTACCAGCCCATGGCCTGGGGTATGTTCCAGCTCAGACAGGGAGCCCCTGCCACGCTTGTTGAAAATGGCCCTGTTCATCACTGATACCAATCTCCCTGTTATCACAGATATCTCTAATGAGAAGTGTATAAAGCGGGATCTCTGCCCCATCCAATGTTCTGTTCACACCCCTACCATCTGGAAAAGGGCGAAGAAGCCTTCAGGACAAAATATCTAGATTAAGAAACAGTTTCTTCCCACAGTCCACCAGACTACTGAACAACCTTGCTGGAGAGTGTTTCATTTTGTCTGAATTAACTGCTCTGCAGAACCTTGCAAACTTTATACTTTTTTTTTTACATTGCACTTAAATTCGGCAAAAAAAAATCAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05292456_05317677.mRNA True 2500 mRNA 0.42 8 5292299 5318991

Neighbor

gene id symbol gene type direction distance location
CI01000054_04671351_04681181 PEF1 coding downstream 610938 4670151 ~ 4681361 (-)
CI01000054_04463229_04486856 DLGAP3 coding downstream 805443 4462888 ~ 4486856 (-)
CI01000054_04411682_04448848 NA coding downstream 843451 4411429 ~ 4448848 (-)
CI01000054_04264074_04331270 THSD7AA, THSD7A coding downstream 961029 4263862 ~ 4331270 (-)
CI01000054_04210959_04214380 NXPH1, NXPH4 coding downstream 1077919 4209840 ~ 4214380 (-)
CI01000054_05341497_05372926 ANGPT2B coding upstream 22119 5341110 ~ 5372926 (-)
CI01000054_05685529_05686880 NA coding upstream 366509 5685500 ~ 5687414 (-)
CI01000054_05711250_05711861 NA coding upstream 391631 5710622 ~ 5712639 (-)
CI01000054_05822181_05823458 ZN706, ZNF706, ZFP706 coding upstream 503177 5822146 ~ 5823684 (-)
CI01000054_05827691_05828736 WDYHV1 coding upstream 508402 5827393 ~ 5830717 (-)
G232275 NA non-coding downstream 71803 5211878 ~ 5220496 (-)
G232266 NA non-coding downstream 95748 5195936 ~ 5196551 (-)
G232251 NA non-coding downstream 115521 5172829 ~ 5176778 (-)
G232241 NA non-coding downstream 122608 5153419 ~ 5169691 (-)
G232247 NA non-coding downstream 128000 5163926 ~ 5164299 (-)
G232406 NA non-coding upstream 38445 5357436 ~ 5359008 (-)
G232432 NA non-coding upstream 85070 5404061 ~ 5409322 (-)
G232437 NA non-coding upstream 92576 5411567 ~ 5412115 (-)
G232439 NA non-coding upstream 95233 5414224 ~ 5414542 (-)
G233356 NA non-coding upstream 155154 5474145 ~ 5474392 (-)
G232274 NA other downstream 83059 5206199 ~ 5209240 (-)
G231645 NA other downstream 1309476 3981847 ~ 3982823 (-)
G230908 NA other downstream 2228956 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 2431726 2857402 ~ 2860573 (-)
CI01000054_06629482_06641861 TRIQK other upstream 1309091 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 1846444 7165435 ~ 7169539 (-)
G235216 NA other upstream 3929048 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 4164156 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 4544330 9863321 ~ 9867212 (-)

Expression


Co-expression Network