XLOC_009868


Basic Information

Item Value
gene id XLOC_009868
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22022291 ~ 22113936 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019695
AGTGCAAGCCATGTTACTTATCAAACGCATTTTCGTTACGGAATTCcaatagaaaacattttacaatctTACCTTTTCCCTCGATCACACTAAACCACTGGGACAAAACGAAAAACATTCGAGCGATCTGTTTCATCTTGGTTGTTTCCTCTGCAGCCACACATTGAATGACTGcccgctcgctcgctcgctctctctctctctctctctctctctctctctctctcacttccgGTGTGAGTGTTTGGGCACGAGAGGACGGGTGTGTGGGAGTGTGCATGCTATGACTGCAGAGCTGGACTTTGAGGCCTGGCTTGAGCTTGAATTTCACCCTCTATGCAACTGCTGAATAAGACAAGCCTGCAAATGGACATGCACAAGAAACAAGAAGAAATCATGTTTATTTCATCTATATTCTGCACTATGGATCTGTATTCTGTTTGCATAACGAAAACTGTGGACTGTAATTGTCTGAAAATGAATGGCAGCTtgGCACCATTCAAGTCATTCAAAAGCAGCAGAAGCTTGACTAATCCTACAGTGGATTCTACCATTATGTTTTTTCTCAACCAAGAAGTCAAGGGCCGGGCTGGTGCACTGCTCCCAGAGTTAGTTAAGTGCTAAACTAAAAGTGCTTGACAACACTACAGGGAGCTGCAAATCTACAAGCCCAAAatgagaagaaaaacaaatatattttctgaACTATGgattactattatttttgtatGGAGAAGAAGTCATGATCGGAGCATGGTAGGAAAATTTTCATTTCAATAAACATTTCTCTTGGAATATCTCTGTTAGCATTCTACTGCTCAGTTTCACACCTAAAATCATGGCTGCGTCACTCTCTGGCCGATTGAGTGAGCCTTGGCATCATGTCAGATTGTAAGAGTACAGTGGGCAGAATGATGACCTTTGGACTTTTCAAACAACTGCAATTCTGTTTCAGTGCTACGCTTGAAGCCCTAAATATAAAAGTCTTGTTTAAAAATACCAACTAAAAATACTAACTTAACAGTAGAAAACCTGAAATATGTTGTTGCACTGAATGAATCAGATTAAATGAAACCCCAACCTCCTCTTTT
>TCONS_00019694
GTTTGGGCACGAGAGGACGGGTGTGTGGGAGTGTGCATGCTATGACTGCAGAGCTGGACTTTGAGGCCTGGCTTGAGCTTGAATTTCACCCTCTATGCAACTGCTGAATAAGACAAGCCTGCAAATGGACATGCACAAGAAACAAGAAGAAATCATGTTTATTTCATCTATATTCTGCACTATGGATCTGTATTCTGTTTGCATAACGAAAACTGTGGACTGTAATTGTCTGAAAATGAATGGCAGCTtgGGCCGGGCTGGTGCACTGCTCCCAGAGTTAGTTAAGTGCTAAACTAAAAGTGCTTGACAACACTACAGGGAGCTGCAAATCTACAAGCCCAAAatgagaagaaaaacaaatatattttctgaACTATGgattactattatttttgtatGGAGAAGAAGTCATGATCGGAGCATGGTAGGAAAATTTTCATTTCAATAAACATTTCTCTTG
>TCONS_00021923
GTTTGGGCACGAGAGGACGGGTGTGTGGGAGTGTGCATGCTATGACTGCAGAGCTGGACTTTGAGGCCTGGCTTGAGCTTGAATTTCACCCTCTATGCAACTGCTGAATAAGACAAGCCTGCAAATGGACATGCACAAGAAACAAGAAGAAATCATGTTTATTTCATCTATATTCTGCACTATGGATCTGTATTCTGTTTGCATAACGAAAACTGTGGACTGTAATTGTCTGAAAATGAATGGCAGCTtgGCACCATTCAAGTCATTCAAAAGCAGCAGAAGCTTGACTAATCCTACAGTGGATTCTACCATTATGTTTTTTCTCAACCAAGAAGTCAAGTTGCCtgatgtgcagctccacctctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093926

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019695 False 1091 lncRNA 0.41 4 22022291 22097683
TCONS_00019694 False 460 lncRNA 0.41 3 22022533 22097384
TCONS_00021923 True 366 lncRNA 0.43 4 22022533 22113936

Neighbor

gene id symbol gene type direction distance location
XLOC_009867 znf687a coding upstream 84247 21917673 ~ 21938044 (+)
XLOC_009866 NA coding upstream 144870 21874395 ~ 21877421 (+)
XLOC_009865 zmp:0000000608 coding upstream 154419 21867161 ~ 21867872 (+)
XLOC_009864 trim108 coding upstream 216317 21789703 ~ 21805974 (+)
XLOC_009863 si:ch211-154o6.3 coding upstream 276955 21698980 ~ 21745336 (+)
XLOC_009869 NA coding downstream 209830 22323766 ~ 22327502 (+)
XLOC_009870 NA coding downstream 214034 22327970 ~ 22329028 (+)
XLOC_009871 C16H1orf43 coding downstream 231577 22345513 ~ 22361219 (+)
XLOC_009872 NA coding downstream 461207 22575143 ~ 22579326 (+)
XLOC_009873 she coding downstream 473725 22587661 ~ 22603354 (+)
XLOC_009862 NA non-coding upstream 387455 21634387 ~ 21634836 (+)
XLOC_009859 NA non-coding upstream 879775 21141048 ~ 21142516 (+)
XLOC_009854 mir196d non-coding upstream 1108807 20913413 ~ 20913484 (+)
XLOC_009848 NA non-coding upstream 1326774 20684940 ~ 20695517 (+)
XLOC_009875 NA non-coding downstream 581290 22695226 ~ 22696496 (+)
XLOC_009889 CR533578.1 non-coding downstream 1493295 23607231 ~ 23607352 (+)

Expression


Co-expression Network