CI01000054_07165957_07169539 (HEYL)


Basic Information

Item Value
gene id CI01000054_07165957_07169539
gene name HEYL
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7165435 ~ 7169539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07165957_07169539.mRNA
CCCTGTCACTGGGTCCATGTCTCCAGGCAGTACCTCACAGATCCTGGCGCGCAAGAAGAGAAGAGGGATAATTGAGAAGAGGCGCAGGGACAGGATCAACCACAGTCTGTCAGAGCTCAGGAGACTCGTACCCAGTGCCTTCGAGAAACAGGGCTCCTCTAAACTGGAGAAGGCTGAGATTCTTCAGATGACAGTGGATCATCTGAAACTGCTTCATGCCATGGGTGGCAAAGGCTACTTTGATGCTCGTGCTCTGGCAGTGGACTACAGGACTTTGGGCTTTCGGGAGTGTGTTGGAGAGGTGGTGAGATACCTCAGCTCTCTGGAGGGAGTTGAATCCTCAGACCCCATCGGTGCGCGCCTTGTGTCCCACCTCAGCCACTGCGCCAGTGAGCTGGACCCTCTCCTCCAGAGCCCCGCCACTCTGCCTTTTCCTCCCTGGCCCTGGCCTTCCTTCCCTCAGCTAGCAGCCACCTCGTCTCCAGTCTCGTCTACCCCTTTTCCCCCAAACGCCCGGCGGGATCTGGCCCCCCATGCCACCGCCACCTTGCTGGGCTACCCTTCACCGGCCCTGCGAGTGGGATGTTTGAGCACCCAGGGGGCGATAATGAATCCAGCGCTGACCCCGGTCCGTCGACTGCCCTCAATCCCCGGCCATCCTCACAGACTTCAACAGCAGTCACCTGATGGATCCACAATCCCATCATCCTCCTCATCTTCCTCCAACTCCTCCACTCCCCAGATTTCTTTCAGACCCTTTGCCCCTCTGGGGTCTCCAGCCCCAGGTCGCAGGGGTTTGAGTACCTCCAGTAAGTCCGCACAGGCCTGGGGCACAGAAATTGGGGCGTTCTGAATCAGAAGTTTGGAGTTTATGACAGTCTGAAAGGAAAAATAGTTTTCTTGGTCATTTGGACTTATTTATGACCATTATTAAAAATAATGGTCATAAGGAACTACAAAGGAACTACAAAGCATTGGACAATTCAGATTAAAATGTTTATTCAGTACCATCTACTATTCCAACTCAAATGACATTTAGAAATAAGAAAATAAA

Function

symbol description
heyl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within Notch signaling pathway and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epidermis; nervous system; neural rod; neural tube; and tail bud. Orthologous to human HEYL (hes related family bHLH transcription factor with YRPW motif like).

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process

KEGG:

id description
K09091 HEY; hairy and enhancer of split related with YRPW motif

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07165957_07169539.mRNA False 1054 mRNA 0.53 4 7165756 7169539

Neighbor

gene id symbol gene type direction distance location
CI01000054_07130499_07136946 NA coding downstream 28810 7130315 ~ 7136946 (-)
CI01000054_07080724_07095503 NA coding downstream 70083 7080352 ~ 7095673 (-)
CI01000054_07033076_07038297 STK3 coding downstream 127459 7031700 ~ 7038297 (-)
CI01000054_07026336_07030820 UK114, RIDA coding downstream 134247 7026147 ~ 7031509 (-)
CI01000054_07006908_07009054 RPL30-PS10, RPL30.S, GM7429, RPL30.L, RPL30 coding downstream 156702 7006875 ~ 7009054 (-)
CI01000054_07228008_07231489 ATXN1A, ATXN1 coding upstream 58055 7227594 ~ 7231489 (-)
CI01000054_07311700_07314853 NA coding upstream 142001 7311540 ~ 7317174 (-)
CI01000054_07368294_07372480 FAM8A1A coding upstream 198553 7368092 ~ 7373799 (-)
CI01000054_07385840_07388475 PMP2, FABP11A, FABPH coding upstream 216253 7385792 ~ 7389417 (-)
CI01000054_07390631_07391977 MRPL53 coding upstream 221047 7390586 ~ 7393103 (-)
G233881 NA non-coding downstream 25405 7140012 ~ 7140351 (-)
G233843 NA non-coding downstream 92586 7072826 ~ 7073170 (-)
G233822 NA non-coding downstream 116756 7040111 ~ 7049000 (-)
G233812 NA non-coding downstream 153779 7011064 ~ 7011977 (-)
G233627 NA non-coding downstream 202348 6960373 ~ 6963408 (-)
G233896 NA non-coding upstream 8301 7177840 ~ 7178439 (-)
G233899 NA non-coding upstream 12230 7181769 ~ 7182120 (-)
G233907 NA non-coding upstream 23460 7192999 ~ 7198957 (-)
G233915 NA non-coding upstream 36369 7205908 ~ 7206180 (-)
G233904 NA non-coding upstream 50492 7220031 ~ 7226845 (-)
CI01000054_06629482_06641861 TRIQK other downstream 511743 6628082 ~ 6642160 (-)
G232274 NA other downstream 1956516 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2493523 4670151 ~ 4681361 (-)
G231645 NA other downstream 3182933 3981847 ~ 3982823 (-)
G230908 NA other downstream 4102413 3057648 ~ 3063343 (-)
G235216 NA other upstream 2078500 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2313608 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2693782 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3634332 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3701565 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014156 heyl coding NC_007130.7 CM002903.2 32553874 ~ 32560591 (+)