XLOC_009885 (icn2)


Basic Information

Item Value
gene id XLOC_009885
gene name icn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23487051 ~ 23491093 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019723
GTTCACTCAACCTGTTCTCTTACTCTTTACTTACTTGGTCTTTTTTTTACAGCCAGAAACATGAGTGGCAAAATGTCAgATACCCAGAAAGCAATGGCTATGCTCATTGCAACCTTCCACAAATACTCAGGAAAGGAGGGTGACAAGTTGACCCTTTCTAAGGGTGAGCTTAAGGAGCTGCTCACTGCAGAGATGAGCGATGTCTTTGGGAAAACTACAGACAAGGCATCTTTGGACAACATATTCAAGGATCTGGATGCAAATGCTGATGGCTCGGTGGACTTTCAGGAGTACATCACATTGATCGCCTGTATCACAATGCTTTGCAATGAGTTTTTCCAAAAAGGAAAATAAGTGTGTTCTTATGGTTGTGTCTGTAATATTATTGTACTGAAAAAAGAATAAAGGTACACATAATAAATTGTGAATTAAAA

Function

symbol description
icn2 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; heart; integument; renal system; and sensory system. Orthologous to several human genes including S100A2 (S100 calcium binding protein A2) and S100A4 (S100 calcium binding protein A4).

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005575 cellular_component cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070822-9 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; heart; integument; renal system; and sensory system. Orthologous to several human genes including S100A2 (S100 calcium binding protein A2) and S100A4 (S100 calcium binding protein A4).

Ensembl:

ensembl_id ENSDARG00000055514

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019723 True 434 mRNA 0.39 3 23487051 23491093

Neighbor

gene id symbol gene type direction distance location
XLOC_009884 icn coding upstream 54499 23431189 ~ 23432552 (+)
XLOC_009883 s100w coding upstream 80896 23403602 ~ 23406155 (+)
XLOC_009882 s100a10b coding upstream 87567 23397785 ~ 23399484 (+)
XLOC_009881 krtcap2 coding upstream 94785 23326085 ~ 23392266 (+)
XLOC_009880 slc50a1 coding upstream 172173 23303859 ~ 23314878 (+)
XLOC_009886 snx27b coding downstream 4507 23495600 ~ 23524374 (+)
XLOC_009887 adar coding downstream 40490 23531583 ~ 23557714 (+)
XLOC_009888 kcnn3 coding downstream 107815 23598908 ~ 23719649 (+)
XLOC_009889 CR533578.1 coding downstream 116138 23607231 ~ 23607352 (+)
XLOC_009890 rab13 coding downstream 305519 23796612 ~ 23809611 (+)
XLOC_009875 NA non-coding upstream 790555 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 907725 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1158023 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1159549 22323766 ~ 22327502 (+)
XLOC_009868 NA non-coding upstream 1373115 22022291 ~ 22113936 (+)
XLOC_009902 NA non-coding downstream 528015 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 707386 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 1024999 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 1074641 24565734 ~ 24573801 (+)

Expression


Co-expression Network