XLOC_009886 (snx27b)


Basic Information

Item Value
gene id XLOC_009886
gene name snx27b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23495600 ~ 23524374 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019724
TTGGCGTCAGTCTTTCCCGTCTGGAGTCTGACGCACTCCGCCAGCCAATAAGCTCATGTAGCACTTCGGCACCCGTGCCCGTTGTGGAGGCAGGATTTCTTCAAATAAAAATGGCAGATGTTGTCGAAGGAGACGGCACTCGCTCCGCTGCCCCTTCCGCTATTCATTCAGCGGCACGCAACGGATCTGGCATGAGCGCGGGGACTTGCGCCGGGGGCCTCGTCGCGACGACGGTCACCTCCGGGCCGCGGCTGGTCCGCATCGTTAAGTCGGACTCGGGCTACGGATTCAACGTCCGCGGGCAAGTCAGTGAAGGAGGGCAACTGAGGAGCATCAACGGCGAACTTTACGCCCCGTTGCAGCACGTTAGCGCCGTGTTACCTGGCGGCGCAGCAGACCGAGCCGGGATCTCAAAGGGCGATCGTATTCTTGAAGTAAACGGGGTGAATGTGGAAGGGGCCACTCATAAGCAGGTGGTGGATCTAATTCGAGCAGGAGAGAAGGAGTTGGTCCTGGCCGTCCTGTCAGTTCCGCAGCCAGAAACAGACAGTCTTGATCCTGGAGACGACGGCTCCTCACAGTCCTGCTATGACTACAGTGACAAGCAGGCCGTGCCCATCTCTGTGCCCACTTACAAACACGTGGAGCAGAGTGGGGAGAAGTTTGTTGTCTACAACGTGTACATGGCAGGCAGGCAGTTATGCTCAAAGCGCTATCGGGAGTTTGCCATCTTGCATCAGAATCTAAAGAGAGAATTTGCCAACTTTGCATTTCCCAAGCTGCCAGGGAAATGGCCTTTCTCCTTGTCTGAGCAACAGCTAGATGCTCGCAGGCGAGGCCTGGAGGAATACTTGGAGAAAGTATGCTCTGTTCGGGTAATCGGGGAGAGCGACATCATGCAGGAGTTTCTGTCGGAGTCTGATGAGAACTATAATGGCGTTTCTGATGTGGAGCTAAGGATAGCCATGCCAGACAAAACTACAGTTACAGTCCGAGTACGGAAGAATTGCACAACAGACCAGGTCTACCAGGCCGTAGTAACAAAGATTGGGATGGACAGCATTACTGCAAGTTATTTTGCTCTGTTTGAAGTCATTAATCACACTTTTGCACGCAAACTGGCTCCAAATGAGTTTCCCCATAAGCTGTATGTGCAGAACTACACGTCTGCTGTCCCAGGCACCTGCCTAACTCTCCGCAAGTGGCTCTTCACCACAGAAGAAGAGATTCTGCTCAACGACAATGAGCTGGCCATCAACTACTGCTTTCATCAgGCTCTGGATGATGTAAAAAAGGGATTCATCAAAGTGGGAGAGAAGTCATATCAGCTCCAAAAGCTCACTGAACAGAGGAAAATGACCATGTATTTAAGTATTCTGAGGACCTGTGAAGGCTACAATGAGATCACTTTCCCACACTGCTCCTGTGACTCTCGCAGAAAAGGTCATGTGATCACAGCGATAAGCATCCGCCACTTTAAACTCCATGCCTGCACAGAAGACGGCACTCTGGAGAATCAGGTGATTGCATTCGATTGGTCTGAGATGCAGAGATGGGACACGGATGAAGAAGGAATGGCTTTTTGTTTTGAGTATGCGAGAGGAGAGAAGAAGCCACGCTGGGTCAAAATCTTTACTCCATATTTCAACTACATGCACGAGTGCTTCGAGAGAGTTTTCTGCGAGCTTAAATGGAGAAAAGAGGTTGAAGAGGAGGCCACAGACAAGGACAACAAGAACTGCAGTAAAGATGAATATCTTCCAGCTGTTGAGACACAGAAGGGATGGAGGCACATGAACGAAGAGATCATCTCCTCCTGATTTTCTCAAGTACATGCACACGAACACTAAACGCAACACGCAGAGACATTTCAGGAAAACATTTCAGTCCcatacacttatacacacacatactgaaatATGAAGCAGGAAATGACAACCACGAACATAAGAAACTACATGAGACTTTTATAGACTTGCGCCATTGTTTGATTTCATTGGACTGGACAGGAAAGGCGCCTGACGTGAACATCACCTGTCATGTGACCGGTCTTCAGATGCAGAAAACTGAGAAGCTGCCCAGACATGTGCGCCTGTGAGGGTCCATATGCTCTCTCAGAATGTatccatttacaaaaaaa

Function

symbol description
snx27b Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within endosomal transport and signal transduction. Predicted to be located in endosome and membrane. Predicted to be active in early endosome. Orthologous to human SNX27 (sorting nexin 27).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:1990126 retrograde transport, endosome to plasma membrane biological_process
GO:0016197 endosomal transport biological_process
GO:0007165 signal transduction biological_process
GO:0005769 early endosome cellular_component
GO:0035091 phosphatidylinositol binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1529 Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within endosomal transport and signal transduction. Predicted to be located in endosome and membrane. Predicted to be active in early endosome. Orthologous to human SNX27 (sorting nexin 27).

Ensembl:

ensembl_id ENSDARG00000016977

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019724 True 2140 mRNA 0.50 13 23495600 23524374

Neighbor

gene id symbol gene type direction distance location
XLOC_009885 icn2 coding upstream 4507 23487051 ~ 23491093 (+)
XLOC_009884 icn coding upstream 63048 23431189 ~ 23432552 (+)
XLOC_009883 s100w coding upstream 89445 23403602 ~ 23406155 (+)
XLOC_009882 s100a10b coding upstream 96116 23397785 ~ 23399484 (+)
XLOC_009881 krtcap2 coding upstream 103334 23326085 ~ 23392266 (+)
XLOC_009887 adar coding downstream 7209 23531583 ~ 23557714 (+)
XLOC_009888 kcnn3 coding downstream 74534 23598908 ~ 23719649 (+)
XLOC_009889 CR533578.1 coding downstream 82857 23607231 ~ 23607352 (+)
XLOC_009890 rab13 coding downstream 272238 23796612 ~ 23809611 (+)
XLOC_009891 si:dkey-7f3.9 coding downstream 287180 23811554 ~ 23835922 (+)
XLOC_009875 NA non-coding upstream 799104 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 916274 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1166572 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1168098 22323766 ~ 22327502 (+)
XLOC_009868 NA non-coding upstream 1381664 22022291 ~ 22113936 (+)
XLOC_009902 NA non-coding downstream 494734 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 674105 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 991718 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 1041360 24565734 ~ 24573801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding CI01000027 null 4835989 ~ 4851178 (+)