XLOC_009888 (kcnn3)


Basic Information

Item Value
gene id XLOC_009888
gene name kcnn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23598908 ~ 23719649 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019726
gaaTGAGAGACGTGCTGTCAGAGTGAGAGCTGGAGGACATGCATCCATTTCTACACAATATCAGACTATCGCTACTTTCCCTCTTACACATTTACAGACGCCACTTTAAATCGCTTTTCTTCACTGGAGGGtgatcatgctaattaatgcaaCGGGTGGATTTATCTTCTAAAACATTTAGCAGCGCGCTAAATCATTTCCCCCAAATTTGTTTTCCGCTTATTTCGATCAGTGTTCAGGTGTTAAAACGCAACAGATTTCGTCCGTAGGAGTCTCGTTTTAATATTTAACGCTTTACACTTCTGACATTAACCTCCAATCTGGAATCACGGCTTGTCAACGAGCGGAGAAGAAATTATGGCATGATTGTGGCaacatgaaaaagaaaaagtgtgGAAGAATATTGTTGCACTGCTTTTGAGATCACCATATGAAGGTGGAGATAGACTGACAGGAGAGAGAGTTGAGGAGCAGAGCGCAAACAAACCTGCTGGAGCCTGGTTGCCATGGATCCCCCTCCCTCTCTAAATCTGGCCCTTCTCAGCGGGAGTGAAGACGAAGAGCAGCGTCTGCCCCTCCCTCTCGGTGGTATTTCCCATGCCTCCCTCTCTGGCAACTACCCTGGGACCAACCACTCGAATCACACGGGAGGGAACAGCAGCCTGGAGCGTCTCAATGGCACTCCATCGCCCACCACGCCAAACCTTCCCCCAGCGTCACTGCCCAAGTTGCCCCTGTCCACAACACCCCAGCTTTCCACACCAATCCCCAACGCTCTTCACCCGACCAGTACGCCACTCTCCTCCTGCTTGGGAAGCCAACACAGCTTAAGCGGGGAGACTTCACCCGTCTACAATGCTCTGTTTTACTCTTCTCATTCACCTTCCACTGAGCGGGAACGGGAGCGAGAGAGGGGATGTAAGCACAGGCAGGCCAGTCCCCTGGTGCACAGGCGGGACAGTAATCCTTTTACAGAGATCGCCATGAGCTCGTGCAAGTACAGCGGTGGTGTGATGAAGCCACTTAGCCGCCTTAGCGCCTCCCGCCGGAATCTCATCGAGTCCGACAGCGGAAGTGACACCAAAGAGGGTGGTGCGAGCACAAGCCAGGTGACCGCGGCCTCCTCTCAGCACAGCCAGCCCCAACCCCAGAACCCCCCAGAGATCGTTATCTCCTCGAAAGAGGATCCGCCTTATGGACATGCTTACGAACTTGAGGCCTCAGCCAATCAAATGTCCATCTACCACCAGAACCACGCCCTCTCTGAGAGCAGGAGTGTGCTCGGTGGGGCGGCAGGGGGCGGGACTAATGGAAGGAGGGGCGGTGCTGCGGGAGGGCCTGGAAGGACCGCTTCTAAAGCTCCTAAACGTAAGAATCAGAACATTGGCTACAAACTAGGCCACAGGAGGGCACTGTTCGAAAAGAGGAAGAGACTTAGTGACTATGCCCTCATATTCGGCATGTTTGGCATTGTTGTCATGGTGATTGAGACCGAGCTGTCCTGGGGTGTCTACAGTAAGAGCTCCATGTATTCTCTGGCATTGAAGTGTCTTATTAGCCTTTCCACCATCATCCTTCTTGGACTAATCATCGCTTACCATGCTCGAGAGGTGCAGCTTTTCGTCATCGACAATGGTGCAGACGACTGGCGAATTGCCATGACCATGGAGAGGGTGCTGCTTATCGCTCTGGAGCTGATCGTTTCGGCGGTTCACCCGGTGCCCGGGGACTTCAAGTTTATGTGGCGGGCGAGACTGGCCTTCTCCTATGCTCCCTCGCAGGCGGAGGCAGATCTAGACATGGTGCTGTCTGTACCCATGTTTCTTAGACTCTACCTCATCGCCCGCGTCATGCTGCTACATAGCAAGCTCTTCACGGACGCCTCCTCCCGCAGCATAGGGGCACTCAACAAGGTGCACTTTAACACACGCTTTGTGATGAAGACCCTGATGACCATATGCCCGGGCACGGTGCTGCTAGTCTTCAGTATCTCCCTGTGGATCATCGCTGCCTGGACCGTACGAGTGTGTGAGAGgtACCATGACGCTCAGGATGTGACCAGTAATTTTTTGGGTGCAATGTGGCTCATCTCTATCACCTTCCTCTCTATTGGATATGGAGACATGGTGCCTCACACCTACTGTGGCAAGGGAGTGTGTCTGCTCACAGGAATTatgGGAGCAGGTTGCACTGCATTGGTTGttgctgtggttgccagaaagcTGGAGCTGACGAAGGCAGAGAAACATGTGCATAACTTCATGATGGACACACAGCTCACCAAACGGATAAAGAACGCAGCAGCGAATGTTCTCAGAGAGACTTGGCTGATTTACAAGCACACCAAGCTGATGAAGAAAATCGACCACTCCCGTGTGCGCAAACATCAGAGGAAGTTCCTTCAAGCCATTCACCAATTGCGAAGCGTAAAAATGGAGCAGAGAAAACTCAGTGATCAAGCCAATACATTGGTGGACTTATCAAAGATGCAGAGCGTCATGTATGAACTGATGTCAGAGCTGAACGACCGAAGTGAGGATCTGGAGAGGCAGATGTTGAGTCTGGAGCAGCGGGTGGAGCGTTTGACGGCCGGCTTTAATGCTCTGCCCGCTCACTTGTCGGCCACGCTCAGCTCCCAGCATGCGGCGCTCGTTCAACTGCTGCGTGAGCGTGATGCCAAGGTTCTGAGCCCCACTGTGCCCTCCGCGCTCTCACCCACTGCTGCCAGCCTGCCTCTAGCCAACCCCCCCTCCGGCTCAGGCTCCATCCCCTCAACTCAGCCCGCAGAGGACAGTCCCAACACCAGCAGCTCCAGTTGTTGAGAGTGCCGGTGCAGGATGTTCCCTCCTGGGCTGCAAGACGGACAATTAGCGAAAGCAGAGAAATAACATAAACATTCACACGCATACGATGCACTGTAACTATGAGCATTGCGCAGCTTGAGTATCTCACAGAGATGGAGGAGATGCTAACATTTGCACAAAACCTCTATGATGACAAAACTGCCATATTTCCTATAGTCCACAAGACGGACGTCCTCTACTGTTACCATGAATGTATTGATTTTAGAAGACTAACTAACTCAGACATGTTAACATGCATGGACTCTTACTTACACTTTCTCTGACTCCGTCTTTGCTACCAAAGTGCTCTCTGTCTATAGTTGACTGGAATGGTGTGTGTTGTAAACCTAGGAGAGGAGGGTGGGAGTGGTTATAGAGAGTATAAATAATCAGCAGCTGAGAATGTTATGATCTGGAGATCTGGACAGCACCTTTTTTACAGTCTGCAAGAGACTAACAGCCATTTGAAAGAAGCATTATTTGGAGGAGCGACGCTGAAGCCAGTCGATAAATTATAAAAACCACCCCATCAAGGTGGAACAGCTGCTCACACTGAAATAACTGTAGAATGAGTGATTATAGTCATTTTCTTAGTGGAATTGCTTCTGTTATAATGGCGTTGAAATAAGAGACTATTTTACTTCTGACCCCATTTTGAAGGAGAGACCATTTTGAAAACTGACTAATAGTGACATCCTGTGGCCGGAATACTGAGTTACATCCTCTTGGAATATTGTACAGTATGCTATTACTGAAAACTTAGCTTTGTATCGCTCAGTTTTTTACCATTAATAATTACTAACGCAGTTATAGCTCATATTTATTATAAGATTATAAGATAGCATTCTTCTCATTCGTCATTGGAAATTATGATTGCTGtataaataatgattttattgATATTAATTATAGATAAGGGAGGTGCCGTTTGAGGTtgaaattattttgtaattttattttaccagAGAGAATTAATAAAGTATATATCTATAA
>TCONS_00019727
ATGGATCCCCCTCCCTCTCTAAATCTGGCCCTTCTCAGCGGGAGTGAAGACGAAGAGCAGCGTCTGCCCCTCCCTCTCGGTGGTATTTCCCATGCCTCCCTCTCTGGCAACTACCCTGGGACCAACCACTCGAATCACACGGGAGGGAACAGCAGCCTGGAGCGTCTCAATGGCACTCCATCGCCCACCACGCCAAACCTTCCCCCAGCGTCACTGCCCAAGTTGCCCCTGTCCACAACACCCCAGCTTTCCACACCAATCCCCAACGCTCTTCACCCGACCAGTACGCCACTCTCCTCCTGCTTGGGAAGCCAACACAGCTTAAGCGGGGAGACTTCACCCGTCTACAATGCTCTGTTTTACTCTTCTCATTCACCTTCCACTGAGCGGGAACGGGAGCGAGAGAGGGGATGTAAGCACAGGCAGGCCAGTCCCCTGGTGCACAGGCGGGACAGTAATCCTTTTACAGAGATCGCCATGAGCTCGTGCAAGTACAGCGGTGGTGTGATGAAGCCACTTAGCCGCCTTAGCGCCTCCCGCCGGAATCTCATCGAGTCCGACAGCGGAAGTGACACCAAAGAGGGTGGTGCGAGCACAAGCCAGGTGACCGCGGCCTCCTCTCAGCACAGCCAGCCCCAACCCCAGAACCCCCCAGAGATCGTTATCTCCTCGAAAGAGGATCCGCCTTATGGACATGCTTACGAACTTGAGGCCTCAGCCAATCAAATGTCCATCTACCACCAGAACCACGCCCTCTCTGAGAGCAGGAGTGTGCTCGGTGGGGCGGCAGGGGGCGGGACTAATGGAAGGAGGGGCGGTGCTGCGGGAGGGCCTGGAAGGACCGCTTCTAAAGCTCCTAAACGTAAGAATCAGAACATTGGCTACAAACTAGGCCACAGGAGGGCACTGTTCGAAAAGAGGAAGAGACTTAGTGACTATGCCCTCATATTCGGCATGTTTGGCATTGTTGTCATGGTGATTGAGACCGAGCTGTCCTGGGGTGTCTACAGTAAGAGCTCCATGTATTCTCTGGCATTGAAGTGTCTTATTAGCCTTTCCACCATCATCCTTCTTGGACTAATCATCGCTTACCATGCTCGAGAGGTGCAGCTTTTCGTCATCGACAATGGTGCAGACGACTGGCGAATTGCCATGACCATGGAGAGGGTGCTGCTTATCGCTCTGGAGCTGATCGTTTCGGCGGTTCACCCGGTGCCCGGGGACTTCAAGTTTATGTGGCGGGCGAGACTGGCCTTCTCCTATGCTCCCTCGCAGGCGGAGGCAGATCTAGACATGGTGCTGTCTGTACCCATGTTTCTTAGACTCTACCTCATCGCCCGCGTCATGCTGCTACATAGCAAGCTCTTCACGGACGCCTCCTCCCGCAGCATAGGGGCACTCAACAAGGTGCACTTTAACACACGCTTTGTGATGAAGACCCTGATGACCATATGCCCGGGCACGGTGCTGCTAGTCTTCAGTATCTCCCTGTGGATCATCGCTGCCTGGACCGTACGAGTGTGTGAGAGgtACCATGACGCTCAGGATGTGACCAGTAATTTTTTGGGTGCAATGTGGCTCATCTCTATCACCTTCCTCTCTATTGGATATGGAGACATGGTGCCTCACACCTACTGTGGCAAGGGAGTGTGTCTGCTCACAGGAATTatgGGAGCAGGTTGCACTGCATTGGTTGttgctgtggttgccagaaagcTGGAGCTGACGAAGGCAGAGAAACATGTGCATAACTTCATGATGGACACACAGCTCACCAAACGGATAAAGAACGCAGCAGCGAATGTTCTCAGAGAGACTTGGCTGATTTACAAGCACACCAAGCTGATGAAGAAAATCGACCACTCCCGTGTGCGCAAACATCAGAGGAAGTTCCTTCAAGCCATTCACCAATTGCGAAGCGTAAAAATGGAGCAGAGAAAACTCAGTGATCAAGCCAATACATTGGTGGACTTATCAAAGATGCAGAGCGTCATGTATGAACTGATGTCAGAGCTGAACGACCGAAGTGAGGATCTGGAGAGGCAGATGTTGAGTCTGGAGCAGCGGGTGGAGCGTTTGACGGCCGGCTTTAATGCTCTGCCCGCTCACTTGTCGGCCACGCTCAGCTCCCAGCATGCGGCGCTCGTTCAACTGCTGCGTGAGCGTGATGCCAAGGTTCTGAGCCCCACTGTGCCCTCCGCGCTCTCACCCACTGCTGCCAGCCTGCCTCTAGCCAACCCCCCCTCCGGCTCAGGCTCCATCCCCTCAACTCAGCCCGCAGAGGACAGTCCCAACACCAGCAGCTCCAGTTGTTGA

Function

symbol description
kcnn3 Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in paranoid schizophrenia and schizophrenia. Orthologous to human KCNN3 (potassium calcium-activated channel subfamily N member 3).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0043005 neuron projection cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0015269 calcium-activated potassium channel activity molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG:

id description
ko04911 Insulin secretion
ko04929 GnRH secretion
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-100921-56 Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in paranoid schizophrenia and schizophrenia. Orthologous to human KCNN3 (potassium calcium-activated channel subfamily N member 3).

Ensembl:

ensembl_id ENSDARG00000019753

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019726 False 3836 mRNA 0.49 10 23598908 23719649
TCONS_00019727 True 2316 mRNA 0.55 9 23600041 23718635

Neighbor

gene id symbol gene type direction distance location
XLOC_009887 adar coding upstream 41194 23531583 ~ 23557714 (+)
XLOC_009886 snx27b coding upstream 74534 23495600 ~ 23524374 (+)
XLOC_009885 icn2 coding upstream 107815 23487051 ~ 23491093 (+)
XLOC_009884 icn coding upstream 166356 23431189 ~ 23432552 (+)
XLOC_009883 s100w coding upstream 192753 23403602 ~ 23406155 (+)
XLOC_009890 rab13 coding downstream 76963 23796612 ~ 23809611 (+)
XLOC_009891 si:dkey-7f3.9 coding downstream 91905 23811554 ~ 23835922 (+)
XLOC_009892 nbn coding downstream 118198 23837847 ~ 23977525 (+)
XLOC_009893 gtpbp10 coding downstream 171794 23891443 ~ 23902439 (+)
XLOC_009894 apoa4b.1 coding downstream 194294 23913943 ~ 23916263 (+)
XLOC_009875 NA non-coding upstream 902412 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 1019582 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1269880 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1271406 22323766 ~ 22327502 (+)
XLOC_009868 NA non-coding upstream 1484972 22022291 ~ 22113936 (+)
XLOC_009902 NA non-coding downstream 299459 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 478830 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 796443 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 846085 24565734 ~ 24573801 (+)
XLOC_009910 NA non-coding downstream 1115126 24834775 ~ 24897111 (+)

Expression


Co-expression Network