XLOC_009906 (si:dkey-56f14.7)


Basic Information

Item Value
gene id XLOC_009906
gene name si:dkey-56f14.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24626448 ~ 24646067 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019768
CAAAGTGCTGTGTTGCAGCACTGTAACAAGTAAAGAAAAGTAGTTCCCAGAGGCTCAGGAGGTTTCTGAACATTAAACATacagacactgtaaaaatttgTCTGAAACTGTATGGCAGATACATCACAGCATATTGTAAATTGattaataaatggagCTTCCAGCAAACAGAGGAATCATTCTCTGCTTATGAGGAACATTTACATAAGTTGTGGttggctttttttattattactttagtgTCTTCCCCCCACATGATCAATGGTGAACCTACAGTACTGCTAAACAgattttgtgttccacagaatgAAGTCAGTCAAATGTACTCAGAACAACATGAGGGTGGAGAAAAAACAGAAAAGGTACATCACACAAAGTGTCACATCACGGTTTAACACAGCGGACAAAGACAGAGTTTACAGGCCAATGCCCAAGTCAGAGATGTTGAGCCAGGATGACCCCAAATCACGCCCAATGCTaGAACTACGAGAGAAGCTCCAGCCAGAAGTGATCGAGCTGATTAAACAGCAGAGGCTGAACCGTCTGTGTGAGGGCACTTGTTTCAGGAAGATCAGCGCTCGTCGCAGACAAGACAAGTTCTGGTATTGCCGTCTGTCACCAAACCACAAAGTGTTACACTATGGAGATATAGAAGAGTTCTCTCAAGGACAAATATCACATGACTCTCTCCAGGACAAAGTGACAGTAGCAGATATCAAAGCAGTGGTAACAGGTAAAGACTGCCCACATATGAGGGAGAAAGGAGCACTTAAGAATAAGGAGTTGCTGGAACTGGCCTTTTCCATTCTTCATAACTCTGATGAATATTTAAACTTCATCGCTCCAGACAAGCACGAATACTGTATATGGACTGATGGTTTAAATGCTCTTTTGGGAAAAGAGATGACAACTGAGCTCACAAGATCAGATATGGACACACTGGTTACTATGGAGCTGAAACTTCGCCTTTTGGACCTCGAAAACATTCAGATTCCTGATGTCGCTCCTCCTGTTCCCAAAGAGCCCAGCACTTACAATTTTGTTTACGACTTTACCCAGCAGCACAATTGAGACTGGAAATGTCCATCATCAGCTGCAAGGATGTATTCACCTTCTTCTCTTTTATTCTATTATACGTCTATCCCTATTATATGGACGGAATCATTTTTTTCTCCTCTAGATTGTGACTATGATGTGATGCTTTAGTTTTATATTCCCTGTAAATTACTGCTATGACTTCACTGAGGAAAACGACAGTGATATTTCTTTTTAGTCACCTGTTATAACAAATACTCAACTTGCTATCATGCACAACATTTTGTGTAACTATGtgtacatgaaaaaaaaagtgaaactgcATTTGTTTCATACTCATACATAAAACACCACACATAACTCATTCTTGGACTGTTACAAATGTGCTAGTAATTTGATAAAAAGATAAACTAAATCATCCTGAAAAATAAAGTGACAGTTAATTATAGAGACTACTTTCTgccattgaataaaaaaaaaaaatcaaaaaggtaa
>TCONS_00019769
AGAGCAGTCCCTTTCTTTCAGCAAGGAGTCAATGGGAAATACTACATTGGGTTCTACTACTTCATTTCTCATATCCACACGCAGACTGGATCTTTTTTTTGAGAGAACTATTCTGGCTGTAGGAGCATTTGCTGTCGCCTGCATTATTTCACATCATTGCCACTGTGACCAGCCTACAGTATTGATGGTTCATTCCTTTCCGCTGGCACACATGCAATTTTAGTATTAACACATGGACATGGCTGTGACATGTGGAGAAAAAACAGAAAAGGTACATCACACAAAGTGTCACATCACGGTTTAACACAGCGGACAAAGACAGAGTTTACAGGCCAATGCCCAAGTCAGAGATGTTGAGCCAGGATGACCCCAAATCACGCCCAATGCTaGAACTACGAGAGAAGCTCCAGCCAGAAGTGATCGAGCTGATTAAACAGCAGAGGCTGAACCGTCTGTGTGAGGGCACTTGTTTCAGGAAGATCAGCGCTCGTCGCAGACAAGACAAGTTCTGGTATTGCCGTCTGTCACCAAACCACAAAGTGTTACACTATGGAGATATAGAAGAGTTCTCTCAAGGACAAATATCACATGACTCTCTCCAGGACAAAGTGACAGTAGCAGATATCAAAGCAGTGGTAACAGGTAAAGACTGCCCACATATGAGGGAGAAAGGAGCACTTAAGAATAAGGAGTTGCTGGAACTGGCCTTTTCCATTCTTCATAACTCTGATGAATATTTAAACTTCATCGCTCCAGACAAGCACGAATACTGTATATGGACTGATGGTTTAAATGCTCTTTTGGGAAAAGAGATGACAACTGAGCTCACAAGATCAGATATGGACACACTGGTTACTATGGAGCTGAAACTTCGCCTTTTGGACCTCGAAAACATTCAGATTCCTGATGTCGCTCCTCCTGTTCCCAAAGAGCCCAGCACTT

Function

symbol description
si:dkey-56f14.7 Predicted to act upstream of or within actin cytoskeleton organization; cell migration; and phagocytosis.

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007010 cytoskeleton organization biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-78 Predicted to act upstream of or within actin cytoskeleton organization; cell migration; and phagocytosis.

Ensembl:

ensembl_id ENSDARG00000055400

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019768 False 1530 mRNA 0.39 8 24626448 24646067
TCONS_00019769 True 942 mRNA 0.44 7 24632096 24645570

Neighbor

gene id symbol gene type direction distance location
XLOC_009905 NA coding upstream 52647 24565734 ~ 24573801 (+)
XLOC_009904 CT867948.1 coding upstream 102372 24516092 ~ 24524076 (+)
XLOC_009903 NA coding upstream 418545 24198479 ~ 24207903 (+)
XLOC_009902 NA coding upstream 597830 24019108 ~ 24028618 (+)
XLOC_009901 apoc2 coding upstream 631806 23984179 ~ 23994642 (+)
XLOC_009907 ywhabl coding downstream 35110 24681177 ~ 24695891 (+)
XLOC_009908 smg9 coding downstream 75489 24721556 ~ 24733321 (+)
XLOC_009909 si:dkey-79d12.4 coding downstream 87674 24733741 ~ 24741400 (+)
XLOC_009910 NA coding downstream 188708 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 coding downstream 235055 24881122 ~ 24881218 (+)
XLOC_009889 CR533578.1 non-coding upstream 1019096 23607231 ~ 23607352 (+)
XLOC_009912 dre-mir-125a-1 non-coding downstream 252104 24898171 ~ 24898253 (+)
XLOC_009913 BX539313.2 non-coding downstream 259489 24905556 ~ 24918957 (+)
XLOC_009929 NA non-coding downstream 561551 25207618 ~ 25213978 (+)

Expression


Co-expression Network