G230910


Basic Information

Item Value
gene id G230910
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2950781 ~ 3043844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU262074
TATAGCTTAGGTGTTTTATTTCATATTGGACTCATCAATGTTTAAATAAAGACAACAGCACAAGGATACAGTTTCAGTTCTGAGTTTATTATATCATTGAAATCATTAATGTGCTTTGCATAGTAGTTTGTTGTTTTACAATGTTGTGGCTGTGAGAAAGTCGGTGCATTGAAGTGGAGTACAAATACTTCCCGTAAAAGATTCATTCATAAACACTGATTAATTCATGAACAAAATACCATGTAGATGGATGATTAAAAATACAAACACTTTCTAAAATGCAAAATCATTTATTAAATGGCAAATCAATTTGACTGTAATTCTATTAATGTTGATTTCACATGAATTAAGTTTGGATGTTAGATTAATCTATCCTCAAGAGTTTGAAAGCCTCTTTCACTTTGGCAGTCTTTGGTAAGAGGTTCACCAAGGTCATGGGAGTTGTTTCCTTACAACACCAACCCTATAATAGATAGAAATGCAACTTATAAAGCAAACACAAAACCATACATTGCATGAGATTTTATCATAAATCTATTAATCATTCACATTTATTTCAGCTTGATGATTAGGCATGATTAATAATACAGCAATAATTTACCACTGCAGCACCCCCACTGGCCAGTCGCTGTCTTGCAGCAGAACTTCTCAGCTGGGCAGTAGACATTTCCCTCACAATGAACAGTTTCAATCTCGGTCTGCCTTTCAAGATCCTGGTCCTGAGTTTTCTGGATAGCTTTGGAGGCTGGCAGAGGAGAAGATGACAATCTCATCCACCCCCTCAAACAATGGGTCGATGTCGAATCGCAGTGATAACCATGACGGCAGCAATGAACTCCATCTCTGCAGCACTGACCATTGAGAATGGACAGCAGTACCACACTCCATAAGGACTCAGACAGCATGTTGTTCCATCAGGACACACAGTAGCAGCATCACAGTGAACCACAGAGACAGAGGCACTATCTACTGACTCTACTGCATCTGAGAGTTCCATCATTGGCTCATCTGCAGCTACAAGAGCTGCCATGAGTAACATCAACACTGGAACCATCTGAAAATGTGACATGAAAATATTATTTGAAATAATATGTTACTATATTAATTATTGAAAAAATGCTTTGATAATTTTTAAAATTATAAATGATAATAATAGATTGATTGACAATGAGAATAAGAACATTTACCTTGCTTGTAGTCTGGGTTTCTTCTTTGTGGATTGTGTTTTGCTGCTGTCTGTGCTGTCCTGTGATGTTCTGACTGTATCTCTTTTATATACACACACGGCTCCTCCCACTGTAAAAACAGGAAACATCAAAATTGAGTCAAAATTTAACCGTGAAGTTTAGATAACGCTTTATGAGTTTTTAAACGGAAGTCCTTATATGAATGTCCTGGAATAGGATATGAAAG
>TU262075
TATAGCTTAGGTGTTTTATTTCATATTGGACTCATCAATGTTTAAATAAAGACAACAGCACAAGGATACAGTTTCAGTTCTGAGTTTATTATATCATTGAAATCATTAATGTGCTTTGCATAGTAGTTTGTTGTTTTACAATGTTGTGGCTGTGAGAAAGTCGGTGCATTGAAGTGGAGTACAAATACTTCCCGTAAAAGATTCATTCATAAACACTGATTAATTCATGAACAAAATACCATGTAGATGGATGATTAAAAATACAAACACTTTCTAAAATGCAAAATCATTTATTAAATGGCAAATCAATTTGACTGTAATTCTATTAATGTTGATTTCACATGAATTAAGTTTGGATGTTAGATTAATCTATCCTCAAGAGTTTGAAAGCCTCTTTCACTTTGGCAGTCTTTGGTAAGAGGTTCACCAAGGTCATGGGAGTTGTTTCCTTACAACACCAACCCTCACTGCAGCACCCCCACTGGCCAGTCGCTGTCTTGCAGCAGAACTTCTCAGCTGGGCAGTAGACATTTCCCTCACAATGAACAGTTTCAATCTCGGTCTGCCTTTCAAGATCCTGGTCCTGAGTTTTCTGGATAGCTTTGGAGGCTGGCAGAGGAGAAGATGACAATCTCATCCACCCCCTCAAACAATGGGTCGATGTCGAATCGCAGTGATAACCATGACGGCAGCAATGAACTCCATCTCTGCAGCACTGACCCTGAAGGAGTGGGCAGAAAAAGCAAAGGTTAAACCTTAAACTTAATGGAGTATAAAACAGTTACCCATTTTACTGTGATTTACCATTGAGAATGGACAGCAGTACCACACTCCATAAGGACTCAGACAGCATGTTGTTCCATCAGGACACACAGTAGCAGCATCACAGTGAACCACAGAGACAGAGGCACTATCTACTGACTCTACTGCATCTGAGAGTTCCATCATTGGCTCATCTGCAGCTACAAGAGCTGCCATGAGTAACATCAACACTGGAACCATCTGAAAATGTGACATGAAAATATTATTTGAAATAATATGTTACTATATTAATTATTGAAAAAATGCTTTGATAATTTTTAAAATTATAAATGATAATAATAGATTGATTGACAATGAGAATAAGAACATTTACCTTGCTTGTAGTCTGGGTTTCTTCTTTGTGGATTGTGTTTTGCTGCTGTCTGTGCTGTCCTGTGATGTTCTGACTGTATCTCTTTTATATACACACACGGCTCCTCCCACTGTAAAAACAGGAAACATCAAAATTGAGTCAAAATTTAACCGTGAAGTTTAGATAACGCTTTATGAGTTTTTAAACGGAAGTCCTTATATGAATGTCCTGGAATAGGATATGAAAG
>TU262076
TGTTAGAACTTCTCAGCTGGGCAGTAGACATTTCCCTCACAATGAACAGTTTCAGTTCTGAGTTTATTATATCATTGAAATCATTAATGTGCTTTGCATAGTAGTTTGTTGTTTTACAATGTTGTGGCTGTGAGAAAGTCGGTGCATTGAAGTGGAGTACAAATACTTCCCGTAAAAGATTCATTCATAAACACTGATTAATTCATGAACAAAATACCATGTAGATGGATGATTAAAAATACAAACACTTTCTAAAATGCAAAATCATTTATTAAATGGCAAATCAATTTGACTGTAATTCTATTAATGTTGATTTCACATGAATTAAGTTTGGATGTTAGATTAATCTATCCTCAAGAGTTTGAAAGCCTCTTTCACTTTGGCAGTCTTTGGTAAGAGGTTCACCAAGGTCATGGGAGTTGTTTCCTTACAACACCAACCCTATAATAGATAGAAATGCAACTTATAAAGCAAACACAAAACCATACATTGCATGAGATTTTATCATAAATCTATTAATCATTCACATTTATTTCAGCTTGATGATTAGGCATGATTAATAATACAGCAATAATTTACCACTGCAGCACCCCCACTGGCCAGTCGCTGTCTTGCAGCAGAACTTCTCAGCTGGGCAGTAGACATTTCCCTCACAATGAACAGTTTCAATCTCGGTCTGCCTTTCAAGATCCTGGTCATTTAAATTCACAGGAATTATTTAAATTATTAAAAAAAATTTTTTACAGCTTAACAGAACAGAATAATCAATCAGAATGGACTAAAGCACATTTCTGCTTTTAAACCATCCAGAATTCATTGCCCCATTGTTTATTTTCACAAACAGAGAGAGAAATTAAAATGACTATTTATGATAATCAAAAACATAGAATTCTATTTCTTTAAATGTGTCAAAAGCCTTATTGTTCACGCTTGAAAATGTTCAACCATGTTTTACTACTGTTGGAAATGGTGATTAGAAGTCATATGACATTGTCTGTGAAGTTACAAGGTCATTGTAACATGATGGGTTGCTTTACTTTAGAGTCTGAGTATGGAAATACCTGAGTTTTCTGGATAGCTTTGGAGGCTGGCAGAGGAGAAGATGACAATCTCATCCACCCCCTCAAACAATGGGTCGATGTCGAATCGCAGTGATAACCATGACGGCAGCAATGAACTCCATCTCTGCAGCACTGACCCTTGAGAATGGACAGCAGTACCACACTCCATAAGGACTCAGACAGCATGTTGTTCCATCAGGACACACAGTAGCAGCATCACAGTGAACCACAGAGACAGAGGCACTATCTACTGACTCTACTGCATCTGAGAGTTCCATCATTGGCTCATCTGCAGCTACAAGAGCTGCCATGAGTAACATCAACACTGGAACCATCTGCTTGTAGTCTGGGTTTCTTCTTTGTGGATTGTGTTTTGCTGCTGTCTGTGCTGTCCTGTGATGTTCTGACTGTATCTCTTTTATATACACACACGGCTCCTCCCACTGTAAAAACAGGAAACATCAAAATTGAGTCAAAATTTAACCGTGAAGTTTAGATAACGCTTTATGAGTTTTTAAACGGAAGTCCTTATATGAATGTCCTGGAATAGGATATGAAAG
>TU262077
CCCCCCTTTTTTTTTTCTTTTTTTTTTTCAGTTTCAGTTCTGAGTTTATTATATCATTGAAATCATTAATGTGCTTTGCATAGTAGTTTGTTGTTTTACAATGTTGTGGCTGTGAGAAAGTCGGTGCATTGAAGTGGAGTACAAATACTTCCCGTAAAAGATTCATTCATAAACACTGATTAATTCATGAACAAAATACCATGTAGATGGATGATTAAAAATACAAACACTTTCTAAAATGCAAAATCATTTATTAAATGGCAAATCAATTTGACTGTAATTCTATTAATGTTGATTTCACATGAATTAAGTTTGGATGTTAGATTAATCTATCCTCAAGAGTTTGAAAGCCTCTTTCACTTTGGCAGTCTTTGGTAAGAGGTTCACCAAGGTCATGGGAGTTGTTTCCTTACAACACCAACCACTGCAGCACCCCCACTGGCCAGTCGCTGTCTTGCAGCAGAACTTCTCAGCTGGGCAGTAGACATTTCCCTCACAATGAACAGTTTCAATCTCGGTCTGCCTTTCAAGATCCTGGTCCTGAGTTTTCTGGATAGCTTTGGAGGCTGGCAGAGGAGAAGATGACAATCTCATCCACCCCCTCAAACAATGGGTCGATGTCGAATCGCAGTGATAACCATGACGGCAGCAATGAACTCCATCTCTGCAGCACTGACCCTGAAGGAGTGGGCAGAAAAAGCAAAGGTTAAACCTTAAACTTAATGGAGTATAAAACAGTTACCCATTTTACTGTGATTTACCATTGAGAATGGACAGCAGTACCACACTCCATAAGGACTCAGACAGCATGTTGTTCCATCAGGACACACAGTAGCAGCATCACAGTGAACCACAGAGACAGAGGCACTATCTACTGACTCTACTGCATCTGAGAGTTCCATCATTGGCTCATCTGCAGCTACAAGAGCTGCCATGAGTAACATCAACACTGGAACCATCTGCTTGTAGTCTGGGTTTCTTCTTTGTGGATTGTGTTTTGCTGCTGTCTGTGCTGTCCTGTGATGTTCTGACTGTATCTCTTTTATATACACACACGGCTCCTCCCACTGTAAAAACAGGAAACATCAAAATTGAGTCAAAATTTAACCGTGAAGTTTAGATAACGCTTTATGAGTTTTTAAACGGAAGTCCTTATATGAATGTCCTGGAATAGGATATGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262074 False 1413 lncRNA 0.37 3 2950781 2952641
TU262075 False 1361 lncRNA 0.38 3 2950781 2952641
TU262076 False 1621 lncRNA 0.37 4 2950781 2982307
TU262077 True 1184 lncRNA 0.40 5 2950781 3043844

Neighbor

gene id symbol gene type direction distance location
CI01000054_02868603_02911589 CDK6 coding downstream 38976 2868444 ~ 2911805 (-)
CI01000054_02857402_02860451 NA coding downstream 90330 2857402 ~ 2860573 (-)
CI01000054_02840361_02849268 NA coding downstream 101513 2839832 ~ 2849268 (-)
CI01000054_02825786_02828251 NA coding downstream 122530 2825753 ~ 2828251 (-)
CI01000054_02709494_02814598 VPS50 coding downstream 135881 2709489 ~ 2814900 (-)
CI01000054_03049995_03054032 NA coding upstream 6020 3049864 ~ 3054032 (-)
CI01000054_03082593_03087260 SFPQ coding upstream 38504 3082348 ~ 3087545 (-)
CI01000054_03485424_03500327 NA coding upstream 440984 3484828 ~ 3500489 (-)
CI01000054_03918853_03925416 NA coding upstream 874554 3918398 ~ 3925416 (-)
CI01000054_03964701_03964965 NA coding upstream 920846 3964690 ~ 3964965 (-)
G231001 NA non-coding downstream 32984 2917235 ~ 2917797 (-)
G230913 NA non-coding downstream 84141 2863400 ~ 2866640 (-)
G230999 NA non-coding downstream 254821 2695624 ~ 2695960 (-)
G230997 NA non-coding downstream 256343 2694209 ~ 2694438 (-)
G230978 NA non-coding downstream 335308 2613035 ~ 2615473 (-)
G231003 NA non-coding upstream 12884 3056728 ~ 3056940 (-)
G231004 NA non-coding upstream 46140 3089984 ~ 3090270 (-)
G231010 NA non-coding upstream 72331 3116175 ~ 3116434 (-)
G231016 NA non-coding upstream 95476 3139320 ~ 3139613 (-)
G231096 NA non-coding upstream 168212 3212056 ~ 3258021 (-)
G230923 NA other downstream 113099 2837237 ~ 2837682 (-)
G230178 NA other downstream 1720646 1185533 ~ 1230135 (-)
G230908 NA other upstream 13804 3057648 ~ 3063343 (-)
G231645 NA other upstream 938003 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 1626307 4670151 ~ 4681361 (-)
G232274 NA other upstream 2162355 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 3584238 6628082 ~ 6642160 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G132301 NA non-coding NC_056717.1 CM032086.1 12197677 ~ 12199695 (+)