Gene
RNA
| Item | Value |
|---|---|
| gene id | G231010 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 3116175 ~ 3116434 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU262185 | True | 260 | lncRNA | 0.34 | 1 | 3116175 | 3116434 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_03082593_03087260 | SFPQ | coding | downstream | 28630 | 3082348 ~ 3087545 (-) |
| CI01000054_03049995_03054032 | NA | coding | downstream | 62143 | 3049864 ~ 3054032 (-) |
| CI01000054_03032517_03047094 | ZMYM4 | coding | downstream | 69081 | 3031826 ~ 3047094 (-) |
| CI01000054_03018229_03030984 | NA | coding | downstream | 85191 | 3018076 ~ 3030984 (-) |
| CI01000054_02999099_03015534 | NA | coding | downstream | 100641 | 2998780 ~ 3015534 (-) |
| CI01000054_03485424_03500327 | NA | coding | upstream | 368394 | 3484828 ~ 3500489 (-) |
| CI01000054_03918853_03925416 | NA | coding | upstream | 801964 | 3918398 ~ 3925416 (-) |
| CI01000054_03964701_03964965 | NA | coding | upstream | 848256 | 3964690 ~ 3964965 (-) |
| CI01000054_03998494_04025965 | NA | coding | upstream | 881984 | 3998418 ~ 4026082 (-) |
| CI01000054_04067809_04076131 | NA | coding | upstream | 951365 | 4067799 ~ 4076762 (-) |
| G231004 | NA | non-coding | downstream | 25905 | 3089984 ~ 3090270 (-) |
| G231003 | NA | non-coding | downstream | 59235 | 3056728 ~ 3056940 (-) |
| G230910 | NA | non-coding | downstream | 72331 | 2950781 ~ 3043844 (-) |
| G230922 | NA | non-coding | downstream | 136721 | 2918027 ~ 2979454 (-) |
| G231001 | NA | non-coding | downstream | 198378 | 2917235 ~ 2917797 (-) |
| G231016 | NA | non-coding | upstream | 22886 | 3139320 ~ 3139613 (-) |
| G231096 | NA | non-coding | upstream | 95622 | 3212056 ~ 3258021 (-) |
| G231144 | NA | non-coding | upstream | 191638 | 3308072 ~ 3308359 (-) |
| G231151 | NA | non-coding | upstream | 198981 | 3315415 ~ 3315625 (-) |
| G231225 | NA | non-coding | upstream | 251657 | 3368091 ~ 3368369 (-) |
| G230908 | NA | other | downstream | 52832 | 3057648 ~ 3063343 (-) |
| CI01000054_02857402_02860451 | NA | other | downstream | 255602 | 2857402 ~ 2860573 (-) |
| G230923 | NA | other | downstream | 278493 | 2837237 ~ 2837682 (-) |
| G230178 | NA | other | downstream | 1886040 | 1185533 ~ 1230135 (-) |
| G231645 | NA | other | upstream | 865413 | 3981847 ~ 3982823 (-) |
| CI01000054_04671351_04681181 | PEF1 | other | upstream | 1553717 | 4670151 ~ 4681361 (-) |
| G232274 | NA | other | upstream | 2089765 | 5206199 ~ 5209240 (-) |
| CI01000054_06629482_06641861 | TRIQK | other | upstream | 3511648 | 6628082 ~ 6642160 (-) |
| CI01000054_07165957_07169539 | HEYL | other | upstream | 4049001 | 7165435 ~ 7169539 (-) |
