G231096


Basic Information

Item Value
gene id G231096
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3212056 ~ 3258021 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU262279
TTCTTGGATTTCAGTCTTCAGGGGTCTCAGTCTCCCCAACTGAACGTGAGATGATGGGGCTCGGAGGAATATTTCATGCCTTTTCAAAGCTTGTCACCAGGCACACCTGCTCTAGGCTATATGAGAGACTCCCTCTCTCTATTAAACAGACTTTTGCACACATTCCGGATGTCTGAAGAATTCCTGTGAGACAATGGAAAGGTCAGGGTTGTAAGTTAATAAAATATACATTTCCCCTCACAGTGTTGTGCATCCTGGCTTCCTACTCCCCACAGTAATTGCATTTCTGGTAGCAGTCAGCAATACTCTCCCCATCTCACAGCTCCTGGAGGAATGTTGAGAGGAAACGATGGCTAACAAAATGGCCCTCCGAATCCCGCCTGTTATCTAGCTGGCAAAAAGCCTGTTTTTTGCTGTTGTGAGGGCTTTGAAGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU262279 True 436 lncRNA 0.47 2 3212056 3258021

Neighbor

gene id symbol gene type direction distance location
CI01000054_03082593_03087260 SFPQ coding downstream 124511 3082348 ~ 3087545 (-)
CI01000054_03049995_03054032 NA coding downstream 158024 3049864 ~ 3054032 (-)
CI01000054_03032517_03047094 ZMYM4 coding downstream 164962 3031826 ~ 3047094 (-)
CI01000054_03018229_03030984 NA coding downstream 181072 3018076 ~ 3030984 (-)
CI01000054_02999099_03015534 NA coding downstream 196522 2998780 ~ 3015534 (-)
CI01000054_03485424_03500327 NA coding upstream 226807 3484828 ~ 3500489 (-)
CI01000054_03918853_03925416 NA coding upstream 660377 3918398 ~ 3925416 (-)
CI01000054_03964701_03964965 NA coding upstream 706669 3964690 ~ 3964965 (-)
CI01000054_03998494_04025965 NA coding upstream 740397 3998418 ~ 4026082 (-)
CI01000054_04067809_04076131 NA coding upstream 809778 4067799 ~ 4076762 (-)
G231016 NA non-coding downstream 72443 3139320 ~ 3139613 (-)
G231010 NA non-coding downstream 95622 3116175 ~ 3116434 (-)
G231004 NA non-coding downstream 121786 3089984 ~ 3090270 (-)
G231003 NA non-coding downstream 155116 3056728 ~ 3056940 (-)
G230910 NA non-coding downstream 168212 2950781 ~ 3043844 (-)
G231144 NA non-coding upstream 50051 3308072 ~ 3308359 (-)
G231151 NA non-coding upstream 57394 3315415 ~ 3315625 (-)
G231225 NA non-coding upstream 110070 3368091 ~ 3368369 (-)
G231234 NA non-coding upstream 118374 3376395 ~ 3376607 (-)
G231241 NA non-coding upstream 124232 3382253 ~ 3383001 (-)
G230908 NA other downstream 148713 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 351483 2857402 ~ 2860573 (-)
G230923 NA other downstream 374374 2837237 ~ 2837682 (-)
G230178 NA other downstream 1981921 1185533 ~ 1230135 (-)
G231645 NA other upstream 723826 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 1412130 4670151 ~ 4681361 (-)
G232274 NA other upstream 1948178 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 3370061 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 3907414 7165435 ~ 7169539 (-)

Expression


Co-expression Network