G233588


Basic Information

Item Value
gene id G233588
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6434748 ~ 6436431 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU265055
TTGACTTTGAAGTTCTTTTTATTCAATGAAGTAAGCATGACCATGATCATGTTCCAAGAACCTCTAGGAGCAAATTACTTGCAGATATGCAGTTTTCGAAGAATAACACAAAGCACATAGCAGTTTATTCATAAATAACACTGTCAATCCAAAACATGTACTATTACATTAAGCTTGTCCACTGCAACTGAAGTCACCAGCATGTGTTATTTCAGCATCTTCTATGAGCAACCTGACTGAACAACCTCAATTCCGCTCATCCTAGCAAAATGGAATCAAACTCCAGAAGGTCCGTTTCTACAGGGTAATTATGCACAGATGCATATATTAATGTGTGTCAGTGACTGGGTCAGCCCTCTTCCTCATTTGCCAAATCTTTCAGAGGCTCCACAGAGTTGTAGTGCTCACCAAGTCCATAAGCATGCCGCATGTAAATTAGTGTGATTGGTGGTTTGTCATATTCTTCACCAATAATAATAGAGGGGGATTCTGCCTGAATGACTTCTATCGGTAGCTGGAGGACCTGCGAAAGGGCTTTTAACTCTAACTGTCCACCCCAAGCAGCTGTGTCTGCAATATCATTGCAGTATTTCTCAAACTCATCTGCAGTGTACATGTCTCCTGAATTGGGGTCAGTGAGGAACGGCAGGAAGTCATCTGCATGGCTCCTCATGTACTGAGCTGTTTGAGCCCGAAGCTCTTTAAGGCTGAGAGAGCCGCCCCGCTCCGTCAGCTGATCCTCCACAGCGCGGTACATGCAGTGACCATCAGAGGAGATCTCTTTGATCTGCAGGTGCCTCTCCACTAGCTTCTGTCTCAGCTTCAGACCCTCCTGATGACGGGAGCCTTTGAGATTCTCCACTTCCGCTTCAGCAATCCGGACCTCCCGCTCCTTCTCAAGAGCAGCCTTTTTCTCCTGAAAAACATGGGATTTTCAGTGTTTTTCAAAATAGACTTAAGTACAGCCACCTAATATGACAAAGAACTCACCCGTTTCTTCTGGGCTTTAGATGTCCGACTTTGCTTGCTCGGATCTGTTTTTTCCTCATTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265055 True 1053 lncRNA 0.45 4 6434748 6436431

Neighbor

gene id symbol gene type direction distance location
CI01000054_06422150_06433402 PEX1 coding downstream 1059 6421808 ~ 6433689 (-)
CI01000054_06321499_06337371 NA coding downstream 96981 6321269 ~ 6337767 (-)
CI01000054_06283619_06286512 NA coding downstream 148072 6280544 ~ 6286767 (-)
CI01000054_06242813_06258348 POC1BL coding downstream 176400 6242741 ~ 6258348 (-)
CI01000054_06222549_06234979 GALNT12 coding downstream 199676 6222467 ~ 6235072 (-)
CI01000054_06469564_06492881 RUNX1T1 coding upstream 32421 6468852 ~ 6492881 (-)
CI01000054_06503408_06508723 NA coding upstream 66802 6503233 ~ 6510068 (-)
CI01000054_06629482_06641861 TRIQK coding upstream 192874 6628082 ~ 6642160 (-)
CI01000054_06830485_06831336 FAM84B coding upstream 392561 6828992 ~ 6831336 (-)
CI01000054_06835747_06861855 FAM91A1 coding upstream 397989 6834420 ~ 6863079 (-)
G233590 NA non-coding downstream 11667 6422781 ~ 6423081 (-)
G233585 NA non-coding downstream 15890 6418605 ~ 6418858 (-)
G233581 NA non-coding downstream 21040 6413083 ~ 6413708 (-)
G233539 NA non-coding downstream 109207 6317321 ~ 6325541 (-)
G233592 NA non-coding upstream 1271 6437702 ~ 6437903 (-)
G233593 NA non-coding upstream 2163 6438594 ~ 6438880 (-)
G233594 NA non-coding upstream 4674 6441105 ~ 6441497 (-)
G233595 NA non-coding upstream 5223 6441654 ~ 6441865 (-)
G233601 NA non-coding upstream 14251 6450682 ~ 6450900 (-)
G232274 NA other downstream 1225508 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 1762515 4670151 ~ 4681361 (-)
G231645 NA other downstream 2451925 3981847 ~ 3982823 (-)
G230908 NA other downstream 3371405 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 3574175 2857402 ~ 2860573 (-)
CI01000054_07165957_07169539 HEYL other upstream 729004 7165435 ~ 7169539 (-)
G235216 NA other upstream 2811608 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 3046716 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 3426890 9863321 ~ 9867212 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location