XLOC_009927 (hcst)


Basic Information

Item Value
gene id XLOC_009927
gene name hcst
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25184207 ~ 25187809 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019797
GGCGGAAGTCTGTTGACACAGCTATTAAGATGTCAACCGTTTAAATGAATCGCAGCACATCACTTGGGTGATCGCGGAAAAAAGTGCTAAACAGGAAATGACAAAGAAAGGGCTTCTAGTGTTTCTCCTCTCTCTGATTGTCATGGTCAGAGCTGATGGAGACAAGTACTCATGTTTTGGAGTGAGCTCAGGGACAGTAGCAGGTATTATTTTCGCTGATGTTGCAGTAACGGTCCTCATTGTTACCACCACCTACTGGTACGCTAGCAAGCGCAGACAGAAGAAGGAAAACGCTGATGAAGTCTACATGAATGTTAGAGCAAACTGCAAAACATGAAGATCTTTGGCAGACTGACGTCAACAATGGAAAACTAAGTGACTGACAGTGGATATTATAAAACATAATGATTTAACACCGTTTCAATACACAACTTTTATCATAGTGGCCTTGTGAATTAGACAAAGTTTTCTAATTTACTCTACTGTAATTGTCTGacacttatttaaaacaatttggaaacattaagatttttttttaagagtttattTTATTCAAGGTAAATTTGATCAAAACACAGTAAAACATTAGTATTacaacatattatt

Function

symbol description
hcst Predicted to enable phosphatidylinositol 3-kinase binding activity and signaling receptor binding activity. Predicted to act upstream of or within positive regulation of phosphatidylinositol 3-kinase signaling and regulation of immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver; lymphocyte; and pleuroperitoneal region. Orthologous to human HCST (hematopoietic cell signal transducer).

GO:

id name namespace
GO:0050776 regulation of immune response biological_process
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity

ZFIN:

id description
ZDB-GENE-061130-1 Predicted to enable phosphatidylinositol 3-kinase binding activity and signaling receptor binding activity. Predicted to act upstream of or within positive regulation of phosphatidylinositol 3-kinase signaling and regulation of immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver; lymphocyte; and pleuroperitoneal region. Orthologous to human HCST (hematopoietic cell signal transducer).

Ensembl:

ensembl_id ENSDARG00000092074

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019797 True 606 mRNA 0.37 5 25184207 25187809

Neighbor

gene id symbol gene type direction distance location
XLOC_009926 wu:fe05a04 coding upstream 2665 25171832 ~ 25181542 (+)
XLOC_009925 znf576.2 coding upstream 14362 25163443 ~ 25169845 (+)
XLOC_009924 znf576.1 coding upstream 20994 25137483 ~ 25163213 (+)
XLOC_009923 CU062628.1 coding upstream 48995 25133335 ~ 25135212 (+)
XLOC_009922 zgc:92590 coding upstream 54132 25126935 ~ 25130075 (+)
XLOC_009928 tyrobp coding downstream 8763 25196572 ~ 25200757 (+)
XLOC_009929 NA coding downstream 19809 25207618 ~ 25213978 (+)
XLOC_009930 NA coding downstream 31626 25219435 ~ 25242310 (+)
XLOC_009931 NA coding downstream 46144 25233953 ~ 25235093 (+)
XLOC_009932 klhl38b coding downstream 58048 25245857 ~ 25250414 (+)
XLOC_009913 BX539313.2 non-coding upstream 265250 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 285954 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 287096 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 302989 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 610406 24565734 ~ 24573801 (+)
XLOC_009937 dre-mir-30d non-coding downstream 153607 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 153915 25341724 ~ 25341811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G145224 NA non-coding NC_048566.1 CM023220.2 42948921 ~ 42949201 (+)
tiger barb (Puntius tetrazona) hcst NA misc NC_056714.1 CM032083.1 15920075 ~ 15923797 (+)