XLOC_009929


Basic Information

Item Value
gene id XLOC_009929
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25207618 ~ 25213978 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021936
cgaacacaaacagtacagccTGCTGCTGTGACTGAAATAAAGTTGAACAACAGCGatggcttaaatgagaggatctggcgaTATGCTCCTAGAAGTCTACAGGACCAGCTCTGCTTGTTTATGATGTTGTTTATTGTATGGCTCCTCATACTCGAGTTCTTCATCACACCGTATGAATCAGCCAAACTCTTTCAGAAAGGGTATTAAGATGGGGTCTTAATGAGCGTCATTCACTGGCTCTGTTGCTGGGCATCATGGGGCCACATCAATGGCTCACCAGTGACTGGCCGCAAATTATCAAGAAGAGAAGCACATCAGGGAGCTGAACGGGGAGGCTGGCAAATATAAGATTAGAGGAGATCCAGGAGATGACACCAAAGAGAAGGATGAGTGTCAAAGTCTGCGTCGAAAAAAGAGCAATGGATGGATTTAAAGCTTCATCTGATGCTTGTGCAGCCGGCGTGAAGATCATGTCATGAATGAGCAGCTGAGGTTTCGTCATGACTCAGCATGCTGTCTATCCCAGACAGAAAAAAACGACTACAAGAGGTCTTTTGGTGTTTGTTAAAGCAAAGGTTACTGATAAAAGGATTCTgtgatgaaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021936 True 605 lncRNA 0.45 2 25207618 25213978

Neighbor

gene id symbol gene type direction distance location
XLOC_009928 tyrobp coding upstream 6861 25196572 ~ 25200757 (+)
XLOC_009927 hcst coding upstream 19809 25184207 ~ 25187809 (+)
XLOC_009926 wu:fe05a04 coding upstream 26076 25171832 ~ 25181542 (+)
XLOC_009925 znf576.2 coding upstream 37773 25163443 ~ 25169845 (+)
XLOC_009924 znf576.1 coding upstream 44405 25137483 ~ 25163213 (+)
XLOC_009930 NA coding downstream 5457 25219435 ~ 25242310 (+)
XLOC_009931 NA coding downstream 19975 25233953 ~ 25235093 (+)
XLOC_009932 klhl38b coding downstream 31879 25245857 ~ 25250414 (+)
XLOC_009933 fbxo32 coding downstream 45335 25259313 ~ 25272633 (+)
XLOC_009934 si:dkey-29h14.10 coding downstream 72020 25285998 ~ 25295185 (+)
XLOC_009913 BX539313.2 non-coding upstream 288661 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 309365 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 310507 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 326400 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 633817 24565734 ~ 24573801 (+)
XLOC_009937 dre-mir-30d non-coding downstream 127438 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 127746 25341724 ~ 25341811 (+)
XLOC_009942 NA non-coding downstream 330448 25544426 ~ 25550654 (+)

Expression


Co-expression Network