XLOC_009932 (klhl38b)


Basic Information

Item Value
gene id XLOC_009932
gene name klhl38b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25245857 ~ 25250414 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019799
CAATGCAGACATGCTATGCAGACAGTGAAGAAACTTGTGTTATGGAAAAACAGAAGGGGTGAGGAGGTGTTAGCGGGACCAGCAGTTCTGACAGAGAGGAGAGGTTTCTATTTTTAGGGAGACTGGAATGTACATTGAGGCCTCTCGAAGGATTTCTCAACAACAAATAACATACCCGTGCTCGCCTCGGTCTCTATAAACATCCACCTGCCAAACTGAGAAAGTGAAGAACTTTCAGAAGTTTCGGAAAACAGAAGGACGAGTTTGAACTTTGCTTGAGGTTTGACGGTCGATTAATATTTAGAGGACTATCTAAAATGTGCTTCAAATCAGCTGAGACAAGCTTAGATGGTCCAGTATCAGAAATTCTGCATTTTAAAGACAAAGACCTGATCTCCAACCTTTTACTGGAGCTGAACACCTTGAGAAAGGACAGAATTCTCACTGATGTTGTTCTGTGCTCTGAGAACAAGGAGATCCCATGTCATCGCAATGTCCTGGTGTCCAGCAGCCCCTACTTCCATGCCATGTTCTGCAGCAACTTCCTAGAGACCCAGAAGTCCAGGATAAACCTTGAAGGAGTTCCTCATGAAATCCTCGCAATGATCGTGGAGTATGTCTACACAGGGTCCATCAGCATCAGCATGGAGCTGGTTCTCCCCCTGATTCAGACCGCCTCGATGCTTCAGTACGGAAGGCTTTTTGAGGCCTGTTCGACCTTCCTGCAGGCCCAACTCAGTGCAGACAACTGCTTGAGCATGATCCGCCTCTCCGAAATCCTGCATTGCTCCAGCTTGCATGAAAAAGCGAGAGAGCTGGCCATTAAGAGCTTCTCAGATGTGGTGGTCTCTGAGGACTTCTGCGAACTCTCACTGCCAGAACTGGTGAGTTACTTGGAGGACGATAAGCTGTGCGTTGAGGAGGAGCAAGTTTTTGAGACTCTTCTTGCTTGGATCCACCATGATCCGTTCTCCAGACATGGCACCATACACGATTTGTTCCGTCGCGTGAGACTGAGACACGTCCACCCTTATTATCTTTTCCAGTTCATTGCCAATGACCCTCTAGTTCAGTCATCATCTTTATGCACAGATATTATCGAATCCGTTCGTCGCCTTTTGTTTTCTGTCGGCACTCATTGTCCTGGTGATCTTGAGCCTCTGTGGAGGACGCCACGACGTCAGAACTGTAAAGAGGGGCTTGTAGTAGTTGGAGGTCGTAAGAATGGTGAACAGACATCCCGTGAGGCGCTACTCTATGATGAACAATCTCACTGTTGGAAATGGCTTGCAAAGATTCCTCTTCGGCTCTACAGGCCTGCTTATGTCTGCATGCACAGCATCCTTTACGTACTAGGAGGCTTAACAATGAAATCAGGAAGCCAATGCACACCCAGCAACACAGTCTACACGCTTTCTCTAAAAACAAATCAGTGGCGAATGGGAGAATCCATGCTGACGTCCCGATACGGCCATCAGAGCGCCACCTacctgcattttatttttgttctgggTGGATTGGGGGCTGATGGACAGCTGTCTAATGAGGTAGAGCGATACGACACTATGTTCAACCAATGGGAGGCCATGGCACCAATGCCCACTGCAGTTCTGCATCCTGCTGTAGCCGCACACAACCAGAGAATCTACGTGTTTGGTGGGGAAGACGCTATGCAGAAACCAGTGCGAATGATTCAGGTGTATCACATTGGAAGGAATATGTGGTGCAGGATAGAAAACAGGACAGTGAAGAATGTTTGTGCACCGGCTGCAGTGATTGATGATAAAATCTACATTGTAGGCGGCTATACAAGAAGAATGGTAGCTTATGATGTAAAAAGCAACACATTTGAGAAATGTGAAAATATGAAGGCCAGGAAGATGCATCACTCTGCGACGGTTGTGAACGGCAAGATCTACGTGACTGGAGGCCGTTTCTTCAACAGCCACGAGCGTGTAGAAGACTCAGACAGCTTTGACTGCTTCGACCCTAAGACAGACGCATGGACGTCAATGGGGAAATTGCCATTCAAGCTATTTGACCACGGCTCAGTACCTCTGGTCTATCTCTCTGATAAGTTTTTGCCGACATGA

Function

symbol description
klhl38b Orthologous to human KLHL38 (kelch like family member 38).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120727-8 Orthologous to human KLHL38 (kelch like family member 38).

Ensembl:

ensembl_id ENSDARG00000040278

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019799 True 2093 mRNA 0.47 4 25245857 25250414

Neighbor

gene id symbol gene type direction distance location
XLOC_009930 NA coding upstream 3547 25219435 ~ 25242310 (+)
XLOC_009931 NA coding upstream 10764 25233953 ~ 25235093 (+)
XLOC_009929 NA coding upstream 31879 25207618 ~ 25213978 (+)
XLOC_009928 tyrobp coding upstream 45100 25196572 ~ 25200757 (+)
XLOC_009927 hcst coding upstream 58048 25184207 ~ 25187809 (+)
XLOC_009933 fbxo32 coding downstream 8899 25259313 ~ 25272633 (+)
XLOC_009934 si:dkey-29h14.10 coding downstream 35584 25285998 ~ 25295185 (+)
XLOC_009935 tbc1d31 coding downstream 45975 25296389 ~ 25315136 (+)
XLOC_009936 dync1i1 coding downstream 66559 25316973 ~ 25337834 (+)
XLOC_009937 dre-mir-30d coding downstream 91002 25341416 ~ 25341543 (+)
XLOC_009913 BX539313.2 non-coding upstream 326900 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 347604 24898171 ~ 24898253 (+)
XLOC_009938 dre-mir-30b non-coding downstream 91310 25341724 ~ 25341811 (+)
XLOC_009942 NA non-coding downstream 294012 25544426 ~ 25550654 (+)
XLOC_009943 NA non-coding downstream 301908 25552322 ~ 25579827 (+)
XLOC_009948 NA non-coding downstream 580290 25830704 ~ 25831076 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05781043_05784234 KLHL38B coding CI01000027 null 5780606 ~ 5784415 (+)