XLOC_009990 (fam171a1)


Basic Information

Item Value
gene id XLOC_009990
gene name fam171a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28547157 ~ 28574789 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019887
gaaGTGGTGCTGAAGGTTCACCTGAGTGACTCCAGCACACATCAGCCTCTGTCTGGTGTCACGGTGGAGGTCTTCACCAACCACACTCCTGTTTCCTCTGACGTCTCTGGTGCAGACGGCAATGCCTTCATCCGGTTTCCCTATCGACTCGTTGACCTGCTTGTAGTCACCGCTACCAAGCGTGGTTATGTGCCCAACTCCGTCCCATGGAGACCCAGCAGGCTGCCTGtgtTCTCATCTCTCAGTCTGGATCTGCTTCCTGAAAGAGCTGCTACTCTGATGGTTTATGAAGATGTGGTGGAGATTGTCTCTGGATTTCAAGgccCAAAGTTGCAGCCGCGGGTCCAGTTCCAGAGAAGAGCATTGAGTCTTCCTTCTAATGCAACCTACACCAACCTGACGGCCTTCCTCACTGTGAGCAGCTCCACACAGGACACACAGTACTTTCCATACCTGCAGGGGCTTCATCCAAACTTCACAGGCAGTGAGCGAAAGTTTGAGCTGACTCCTATAGCTGCACTCAGTGTCCATCTTCTGGGCAGTGATGGGGTGGAGCTTCACGTCAGCGAGCCAATCAGTGTGAGCGTCCCTCTTCCTGCAAACAGTGGCTTAAAAGAGAATGATCACATTCCGGCATGGAGGTTTGACCCTAAACTGGGTGAGTTTATAAAGAGCAGTCTTGGATACGTCCAGAGAGAGGGCAAGCAGTTGACTCTCACGTACATTGCCCCTCAGCTTGGCTATTGGGTCGCAGCAATGTCTCCTATCAACACAGGTCCGGTGGTAGCAAAGGACATTAGCACTTACCACACAGTCTTCCTGCTGGTCATACTAGGGGGAATGGCCCTCATACTGCTGTTCCTGCTCTGCCTGCTGCTCTACTATTGCAGgaggaagTGTACCCGTTTGCGGCCTGCTCACCGGAAGTTCACATTATCCTCAGCTTTGGATGGCTCTAAACGAGACCAGGCTACTTCCATGTCCCACCTTAACCTCATCAATGAGACTCACCTTGACCAGAACGGGGCAGAGCCGGACATGCACACACCTATGCTTAAACCCACTCCCTACGACTCCTCCACCAATGAGCTTGCGACTTCGCGTGGCGAGCTTCACAGCCGAGGACGAGGGGAATACCGACGGAGCTATACGTCCATTACGACTTCGTCCGTCCATCCCCTCCACATGTCTGTCTCCTCCTCTTCGCCTCATACCTTGCATCACACCACCTCTGCAGGACGTCTCTCTTCGGAGAGTAAATCAAGCTTGCGGGATCAACGTCTGTCTCCTGTTTCGGCCGCAAGTCCTGCCGGATCTCCAGAACGGGAGCAAGGAATTGAGCGACGGACAACTGATTACTTGTTGTCCCGCTCTGTAGACCATCTAGAGCGTCCTGCCCCACTTCCCCGACCTGGAGCCCTGCTCTGCTGTACCTCCGAACTTATAGTGAATAAAGGGGAAGAAACCTACCGCAAGGCTCGCCCCACCCTCGTCATCCCAGCTCACTACATGAGACTTCCAGGGACGCACCCTCTGTCTGGCCAGGCACTGCTGTTGCAGTCAGATGTACAGAGCGAATTGGAAACCATTCAGGCGGAGCTCAGCGCATGCCACCAGCCCCAGGGTCAGGTTCTGCACAAGGGAGAGCAGGAAGGAGGGACACAAGGGATGGGGGAAGACCAGGGTGGAGGAGCTGATGAGTGGACACTGCAGACAGCAGCTCTTCCTGCTGATCTCTCCATCCCCAATTCTCTCAGTCAGGCAGGACTGGATGTGGTGCAGATGAACGGAGAAGATCAGCTTCTGGCTGAAAAGACTTTAATGGAGCTCAGGGGTGGGAAACCGCTCCCTCACCCCAGGGCTTGGTTCGTTTCTCTGGACGGACGCTCCAACGCGCACATCCGCCATTCCTACATTGACTTGCAAAGGGCTGGATGCAACAGCAGTTGTGTCGGAAGCAACGACGCCAGTCTGGACTCTGGTGTTGATATGAGCGACGTCACACCGGGGCGGCGTGTTCGTGATAAAGTTGTTGTTAAAACTGAACCTGAGGCTCAACCTGCAGCACCTGTGGTTGGACATACACCGGTATTGATTGTAGAGGATTCAAATGCCGATGAGGAGAACAGCGGTAGCCCCACGCCAGTCTGCAGCCCTGAAGAAAGTGCTCTAAAGGGTTTACTGCAGGAGAAACAGAGCGAAGAGGATGACGAAGGGACTTTGTCTCCTCCGTCACCTCCCCCTGAGATTCCTTCACCACCTCCTCTACCTGAGCCTGTAGTTGAAACTTCAGAGGATACAGGGATAGATGGTGAGGTTTTTAGGACTGAGGAGACTCCAGTACACATGAACAGCAGCCGGCCAGACAAACTGCTCGTCCCTGATGACGGAGGTGAAGACGAGAACAAGAAAAGTCCATGGCAGAAACGAGAGGAGCGACCACTACTGGCCTTTAACCTAAAATGA
>TCONS_00019886
gaaGTGGTGCTGAAGGTTCACCTGAGTGACTCCAGCACACATCAGCCTCTGTCTGGTGTCACGGTGGAGGTCTTCACCAACCACACTCCTGTTTCCTCTGACGTCTCTGGTGCAGACGGCAATGCCTTCATCCGGTTTCCCTATCGACTCGTTGACCTGCTTGTAGTCACCGCTACCAAGCGTGGTTATGTGCCCAACTCCGTCCCATGGAGACCCAGCAGGCTGCCTGtgtTCTCATCTCTCAGTCTGGATCTGCTTCCTGAAAGAGCTGCTACTCTGATGGTTTATGAAGATGTGGTGGAGATTGTCTCTGGATTTCAAGgccCAAAGTTGCAGCCGCGGGTCCAGTTCCAGAGAAGAGCATTGAGTCTTCCTTCTAATGCAACCTACACCAACCTGACGGCCTTCCTCACTGTGAGCAGCTCCACACAGGACACACAGTACTTTCCATACCTGCAGGGGCTTCATCCAAACTTCACAGGCAGTGAGCGAAAGTTTGAGCTGACTCCTATAGCTGCACTCAGTGTCCATCTTCTGGGCAGTGATGGGGTGGAGCTTCACGTCAGCGAGCCAATCAGTGTGAGCGTCCCTCTTCCTGCAAACAGTGGCTTAAAAGAGAATGATCACATTCCGGCATGGAGGTTTGACCCTAAATATGGAAGGTGGACAAGGCcaaatCTTGGATACGTCCAGAGAGAGGGCAAGCAGTTGACTCTCACGTACATTGCCCCTCAGCTTGGCTATTGGGTCGCAGCAATGTCTCCTATCAACACAGGTCCGGTGGTAGCAAAGGACATTAGCACTTACCACACAGTCTTCCTGCTGGTCATACTAGGGGGAATGGCCCTCATACTGCTGTTCCTGCTCTGCCTGCTGCTCTACTATTGCAGgaggaagTGTACCCGTTTGCGGCCTGCTCACCGGAAGTTCACATTATCCTCAGCTTTGGATGGCTCTAAACGAGACCAGGCTACTTCCATGTCCCACCTTAACCTCATCAATGAGACTCACCTTGACCAGAACGGGGCAGAGCCGGACATGCACACACCTATGCTTAAACCCACTCCCTACGACTCCTCCACCAATGAGCTTGCGACTTCGCGTGGCGAGCTTCACAGCCGAGGATCCAACCACTACAAACACTCAGTTGAAATATTTCCTCTCAAATCGGCTTGCTCAAACAATCCCTCTGAAGGTTATGATTCCGCTGCTGGACGAGGGGAATACCGACGGAGCTATACGTCCATTACGACTTCGTCCGTCCATCCCCTCCACATGTCTGTCTCCTCCTCTTCGCCTCATACCTTGCATCACACCACCTCTGCAGGACGTCTCTCTTCGGAGAGTAAATCAAGCTTGCGGGATCAACGTCTGTCTCCTGTTTCGGCCGCAAGTCCTGCCGGATCTCCAGAACGGGAGCAAGGAATTGAGCGACGGACAACTGATTACTTGTTGTCCCGCTCTGTAGACCATCTAGAGCGTCCTGCCCCACTTCCCCGACCTGGAGCCCTGCTCTGCTGTACCTCCGAACTTATAGTGAATAAAGGGGAAGAAACCTACCGCAAGGCTCGCCCCACCCTCGTCATCCCAGCTCACTACATGAGACTTCCAGGGACGCACCCTCTGTCTGGCCAGGCACTGCTGTTGCAGTCAGATGTACAGAGCGAATTGGAAACCATTCAGGCGGAGCTCAGCGCATGCCACCAGCCCCAGGGTCAGGTTCTGCACAAGGGAGAGCAGGAAGGAGGGACACAAGGGATGGGGGAAGACCAGGGTGGAGGAGCTGATGAGTGGACACTGCAGACAGCAGCTCTTCCTGCTGATCTCTCCATCCCCAATTCTCTCAGTCAGGCAGGACTGGATGTGGTGCAGATGAACGGAGAAGATCAGCTTCTGGCTGAAAAGACTTTAATGGAGCTCAGGGGTGGGAAACCGCTCCCTCACCCCAGGGCTTGGTTCGTTTCTCTGGACGGACGCTCCAACGCGCACATCCGCCATTCCTACATTGACTTGCAAAGGGCTGGATGCAACAGCAGTTGTGTCGGAAGCAACGACGCCAGTCTGGACTCTGGTGTTGATATGAGCGACGTCACACCGGGGCGGCGTGTTCGTGATAAAGTTGTTGTTAAAACTGAACCTGAGGCTCAACCTGCAGCACCTGTGGTTGGACATACACCGGTATTGATTGTAGAGGATTCAAATGCCGATGAGGAGAACAGCGGTAGCCCCACGCCAGTCTGCAGCCCTGAAATTCCTTCACCACCTCCTCTACCTGAGCCTGTAGTTGAAACTTCAGAGGATACAGGGATAGATGGTGAGGTTTTTAGGACTGAGGAGACTCCAGTACACATGAACAGCAGCCGGCCAGACAAACTGCTCGTCCCTGATGACGGAGGTGAAGACGAGAACAAGAAAAGTCCATGGCAGAAACGAGAGGAGCGACCACTACTGGCCTTTAACCTAAAATGA

Function

symbol description
fam171a1 Predicted to be involved in regulation of cell shape and stress fiber assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human FAM171A1 (family with sequence similarity 171 member A1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061208-1 Predicted to be involved in regulation of cell shape and stress fiber assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human FAM171A1 (family with sequence similarity 171 member A1).

Ensembl:

ensembl_id ENSDARG00000079788

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019887 False 2466 mRNA 0.54 8 28547157 28574789
TCONS_00019886 True 2469 mRNA 0.54 9 28547157 28574789

Neighbor

gene id symbol gene type direction distance location
XLOC_009988 itga8 coding upstream 34297 28383758 ~ 28512860 (+)
XLOC_009989 CR936250.1 coding upstream 158994 28388046 ~ 28388163 (+)
XLOC_009987 NA coding upstream 175827 28270015 ~ 28371330 (+)
XLOC_009986 NA coding upstream 497129 28049554 ~ 28050028 (+)
XLOC_009985 znf804b coding upstream 548301 27957808 ~ 27998856 (+)
XLOC_009991 nmt2 coding downstream 3563 28578352 ~ 28591541 (+)
XLOC_009992 acbd7 coding downstream 21766 28596555 ~ 28599328 (+)
XLOC_009993 crot coding downstream 27185 28601974 ~ 28627568 (+)
XLOC_009994 NA coding downstream 85606 28660395 ~ 28667333 (+)
XLOC_009995 dcst2 coding downstream 152594 28727383 ~ 28754071 (+)
XLOC_009984 NA non-coding upstream 673790 27839927 ~ 27873367 (+)
XLOC_009977 CR848817.1 non-coding upstream 1131345 27415697 ~ 27415812 (+)
XLOC_010005 NA non-coding downstream 636573 29211362 ~ 29230847 (+)
XLOC_010006 NA non-coding downstream 671091 29245880 ~ 29250848 (+)
XLOC_010014 NA non-coding downstream 1016330 29591119 ~ 29600668 (+)
XLOC_010018 NA non-coding downstream 1146838 29721627 ~ 29813252 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_07432479_07451012 FAM171A1 coding CI01000027 null 7432479 ~ 7452012 (+)