CI01000092_04869145_04870424 (TRIM59)


Basic Information

Item Value
gene id CI01000092_04869145_04870424
gene name TRIM59
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4869145 ~ 4870593 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_04869145_04870424.mRNA
GAAAAACAGCTGTTGCCTACGTTTGTCCCATCATGGATAATCTGGAGGAGGATCTGACGTGTTCGGTGTGTTATGGTCTCTTCACAGACCCGAGGGTGTTACCCTGCTCCCACACCTTCTGCAAGAGCTGCCTGGAAAACGTGCTGCAGGTCTCGGTTAACTTCTCCATCTGGCGTCCTCTCCGCCTGCCGCTCAAGTGTCCCAACTGCCGCAGCGTGGTGGAGCTCCCCACAAACGGCGTGGACGCGCTTCCGGTCAACGTGTGCCTGCGAGCCATCGTGGAGAAGTACCAACGCGACAGCCAGCCCCGTTCACCCGCCTGCCCCGAACACCCTCGACAGCCTCTGAACGTCTACTGTGTTCAGGACCGCAAGCTCATATGCGGCTTTTGTCTTACTATCGGCCAGCACCAAGGCCACGCCATCGACGACCTCCAGACAGCCTACGTGAAGGAGCGCACCGGCCAGGCCCGACTGATGGAGAGCTTGAGAGGCAAGCGTTGGGAGGACATCTGCAGCCTGGCCGAACGCCTAGAGCAGGAGAAGGTTCGGAGTGAGGCTTTGGTTGAGAACGACCGCGAGGTCGCAACTCGTTTTTTTCAGGGCCTTGACCTCATCTTGGCCCAAAAGAAGGAGCAGTTCATGCAGGCTCTGGACCGGGCGAGCGTGCTGCTGGCGTGTGCCTATGACCCGCTCATCGAGCAGGTGAAGGACATGCAGGAGGAACACAGCGATCTGATCTCCCTCAGCTCCAGCATCGAGAGCGAGGAGTGTCCTCTGGTGTATCTGGAGAAGGTGCATCAGCTGAGGCAGCGCGTGAACGCCTTGAGCCAGACGGCGCTGCCCGAGGTCCCCAGCCTTCACATGACGCCGCGGGCGGAGCCGTTCTTTGAGGAACACTGGTCTGACGTGACCATCAGAGGTCTGAGGGATGGTCCTCTTCCAGAAATTTCATGTCATGCACACAGGTCAGCTCAGGCCACGGATCAAACTCAGTCCCGGCATCTTTGTTCATCTTCAGCTGTTGTCATGTTGATGCTGCTCGTCCTGGTGCTCTCAGCCCTGTGTTTGCATTCAGTGGGTGGAAGCGGTAGTGGGTTTTCTGGTCTCCGTCATGTAGTAGAAAACATTTCAACTGAGCTCACTAAACCTCTTCATGACATCGGGACGTTCTTCTTTTGTCTGCTACACCACAACGTCATGAGATTAAACACTTTTATGTCTACTTTAGGAGAAAACACCTATCAGTATCTGCTCACCTTTCTCAAAACATCACACTAGTGTTAAATACTCAAGATGCTGCAAACATTCGGCCTTCGTGAAAAAAAAAACAATGAATTTCTAGGTCAAACTGTACAAACCATTTACACAAATTTGTTCTGCTCATTTCAAGAATGAGGCTAATACTGTACAAATACTGTAATACATGTTTGATCGGAATGCTCATCAA

Function

symbol description
trim59 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm. Is expressed in brain; female organism; ovary; spleen; and testis. Orthologous to human TRIM59 (tripartite motif containing 59).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_04869145_04870424.mRNA True 1449 mRNA 0.53 1 4869145 4870593

Neighbor

gene id symbol gene type direction distance location
CI01000092_04797021_04804488 KPNA4 coding upstream 64606 4797021 ~ 4804539 (+)
CI01000092_04748399_04769770 NA coding upstream 98738 4747852 ~ 4770407 (+)
CI01000092_04743874_04744642 NA coding upstream 124503 4743656 ~ 4744642 (+)
CI01000092_04716003_04716251 SPTSSB coding upstream 152242 4715819 ~ 4718648 (+)
CI01000092_04707655_04708614 NA coding upstream 160126 4707655 ~ 4709019 (+)
CI01000092_04904673_04935963 IFT80 coding downstream 34080 4904673 ~ 4936187 (+)
CI01000092_04939414_04942110 NA coding downstream 68288 4938881 ~ 4942138 (+)
CI01000092_04981384_04996796 NA coding downstream 110791 4981384 ~ 4997036 (+)
CI01000092_05020449_05021191 NA coding downstream 148112 5018705 ~ 5021820 (+)
CI01000092_05026383_05029730 NA coding downstream 155478 5026071 ~ 5031196 (+)
G306259 NA non-coding upstream 67231 4755240 ~ 4801914 (+)
G306376 NA non-coding upstream 139648 4729163 ~ 4729497 (+)
G306372 NA non-coding upstream 156985 4711844 ~ 4712160 (+)
G306371 NA non-coding upstream 158561 4710126 ~ 4710584 (+)
G306413 NA non-coding downstream 71936 4942529 ~ 4943000 (+)
G306417 NA non-coding downstream 79662 4950255 ~ 4950539 (+)
G306420 NA non-coding downstream 81897 4952490 ~ 4952720 (+)
G306422 NA non-coding downstream 84977 4955570 ~ 4955782 (+)
G306425 NA non-coding downstream 88461 4959054 ~ 4959305 (+)
G305596 NA other upstream 1007812 3726347 ~ 3863135 (+)
G305584 NA other upstream 1201180 3667308 ~ 3667965 (+)
G304938 NA other upstream 2550911 2317792 ~ 2318234 (+)
G303768 NA other upstream 3552622 1315443 ~ 1316523 (+)

Expression


Co-expression Network