G398222


Basic Information

Item Value
gene id G398222
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000242
NCBI id null
chromosome length 629286
location 268968 ~ 270424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU456704
AATATACACAGCACACACGCATATATTATGTAAACACAAACTTTTATTTTGGATGCGATGGATGAGATATTGATCAGATCTTGTTGCTTTAAAGTCAGTATGAAATCGTCTTTTGTGACGTATATCCAAGAGAAATGGCTTCTCAAACAAGAACAAATGTTGGGCGGGGCTTGATTTTGTCCGTGGGGAATTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATTTGATTGACAGGTTGCCCCGCCCTCACACCAGTAAACATCAACAGAGAAGAAAAGAGATGAGCTGTAAGAGAGAGGGGAAGTTATTTTCGTTAAAGATTATAAGGGCACATGAATAAAAAATAATGCTTTGTGCAGATAAATCATTCGTAATAAATACTGCAATATTCCATAAAAAATAAGAATTGTCAATTTTGATTTCATGGTGACTTTAAATTAAACCAAATGTTTAGCTCATATGAATAATTGTGATCTTTGAATGAATGTGTTGTTTCTCTTTCTCTGGAGACATGTTCTGTTAATATTTATTACAGTGGTAACTTTTGAGAGCATACATGCCTGGGAAATATGCCAGATAATGAAATATGTGTGGATCGGATCAGTTCAGGAATCTTACATAAGCTTTGGGTCTGTAAAATGTCCCAGCTATGATTTTAACATGCTGCTGCTGCTGCTTTGAATTGCAAAACATTAAACGATTCAAATAAGCGTCTGATTTGTGTTTGGATATTACAGATAATAGAAGAGATTACCTGTGAATAAAGATCAATATCAATCATTGGGGGGCTGCGTGAGTTTGATTCAGTCTAATACTCTGGATTTGGGTATTATAAACAATGTAAACAACAGCGTATTGTCACTGCGCTCATCTGTCTGATGTTGACCCACTTCATGTCCCTTTTGACAGACACCATGAAATTTTAATGTTAGGTTTAAGCAGCTTATAGCTGGCAGAGAACCAGACCAGTTCAACCACAATAAATTCAAGTCATACATGTTCAAGAGTTTTTTTCCCCCAAACAATATGTGTTATTAGAACTGTATACAGTGGAATTTAAATGAAGGTTAGAAAAACAACGCAACCGGCTGGTGAGTGTTTCGTGGAAAGTGTATAAATAATAGATTCACTCTTTCTGTTTGTGTGAGTGTGTAAAGTTAGAAGATACCGGTTACACTGATGTACGAGCCAAAAATAACTGTCTTTAAATTTACATTTTCTAAGCACTTTGCTTTTGATTAAATTTAAATATATTTAAATATATTTAACATTAAATATAATTATATACACATATAAAATATATTTATATAATGTAAGTAATATTTTAATTTACATTAAAATACTTAAATTATGTGTGTATAAAATATGAAAAAAAAAATATATGCACATATTATATAAAATATATTTACATAATGTAAGTAATATTTAAATTTACATTAAAATACTTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456704 True 1457 lncRNA 0.32 1 268968 270424

Neighbor

gene id symbol gene type direction distance location
CI01000242_00264251_00267773 NA coding downstream 1195 263213 ~ 267773 (-)
CI01000242_00230847_00255610 NA coding downstream 12760 230847 ~ 256208 (-)
CI01000242_00209467_00209713 NA coding downstream 59255 209259 ~ 209713 (-)
CI01000242_00054328_00061612 TYR coding downstream 207002 53115 ~ 61966 (-)
CI01000242_00037939_00038523 NA coding downstream 230029 37552 ~ 38939 (-)
CI01000242_00272088_00293729 NA coding upstream 982 271406 ~ 293729 (-)
CI01000242_00300190_00331091 NA coding upstream 29734 300147 ~ 331091 (-)
CI01000242_00385392_00398812 NA coding upstream 114803 385227 ~ 398812 (-)
CI01000242_00457985_00464094 FLJ13639 coding upstream 187540 456146 ~ 464094 (-)
CI01000242_00475400_00477268 NA coding upstream 204933 475357 ~ 478060 (-)
G398277 NA non-coding downstream 21225 242422 ~ 247743 (-)
G398220 NA non-coding downstream 95950 155020 ~ 173018 (-)
G398216 NA non-coding downstream 104440 157922 ~ 164528 (-)
G398241 NA non-coding downstream 206635 62071 ~ 62333 (-)
G398297 NA non-coding upstream 37815 308239 ~ 308700 (-)
G398299 NA non-coding upstream 38630 309054 ~ 369183 (-)
G398325 NA non-coding upstream 127436 397860 ~ 398603 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000916 METTL21C coding NC_007112.7 CM002885.2 454315 ~ 462165 (-)