CI01000299_00826470_00828773


Basic Information

Item Value
gene id CI01000299_00826470_00828773
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 826433 ~ 828960 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_00826470_00828773.mRNA
CAATATATCACCAGGATGCAGTAAAGCATTGACCAAAATGTTATACTGTCCATACTGTGGAGGAATGCCAGGCCTCAAACCCTGCGCCAACTACTGCCAAAATGTCATGCGGGGCTGCCTGGCCAACCAAGCGGACCTGGACCCAGAGTGGAACCTCTTCATTGCCTGTGTTGATGTGCCCTTCTCACCTGCATTGATTGGCAGGCCTGTGAAGACATTCAGACCACGTCTTGAGCTGGTCTGGCCCCATTCACTGTATCGATTGAAGAAACTGTGTGGTTTACCAAACTTTCGCAGGGAATGCCTTTTGGAAATTGGCAGTATTGAGCTGATTACGTCGACCAGTATGAGATTTTTTAATGGATGAAGCCAATACGGCCAACTCAAGGGTGTATATATGCAATATGGGTTAATGCAATTTAATTATAGCAGTTCCCAGAGGAAAAGCTCCTCATTTATATAGTTCAGCATATTTAATGGAGCTCTCATGCATGTTTCAGCATCAACTTTGGCTCAGATGTTTCTTCTGACATGCATAAAATAACATATCTATA

Function

NR:

description
Glypican-6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_00826470_00828773.mRNA True 554 mRNA 0.44 2 826433 828960

Neighbor

gene id symbol gene type direction distance location
CI01000299_00795673_00796901 GPC6 coding upstream 29276 795673 ~ 797157 (+)
CI01000299_00689032_00727635 NA coding upstream 98597 688906 ~ 727836 (+)
CI01000299_00419297_00444862 NA coding upstream 380545 419297 ~ 445888 (+)
CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding upstream 464347 345042 ~ 362086 (+)
CI01000299_00315123_00328550 RAP2B, RAP2C, RAP2A, RAP2AB, RAP2A.S coding upstream 496270 315123 ~ 330163 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding downstream 33843 862803 ~ 911972 (+)
CI01000299_01036243_01046776 NA coding downstream 206077 1035037 ~ 1047603 (+)
CI01000299_01049508_01055558 NA coding downstream 220430 1049390 ~ 1055736 (+)
CI01000299_01139684_01147241 NA coding downstream 310537 1139497 ~ 1147248 (+)
CI01000299_01197545_01215711 NA coding downstream 368462 1197422 ~ 1215989 (+)
G404016 NA non-coding upstream 176619 649415 ~ 649814 (+)
G403971 NA non-coding upstream 222850 602832 ~ 603583 (+)
G403965 NA non-coding upstream 243310 582756 ~ 583123 (+)
G403952 NA non-coding upstream 275691 550501 ~ 550742 (+)
G403595 NA non-coding upstream 663638 60419 ~ 162795 (+)
G404137 NA non-coding downstream 241648 1070608 ~ 1075893 (+)
G404074 NA non-coding downstream 294619 1123579 ~ 1125274 (+)
G404075 NA non-coding downstream 296780 1125740 ~ 1127444 (+)
G404385 NA non-coding downstream 312396 1141356 ~ 1141636 (+)
G404424 NA non-coding downstream 366517 1195477 ~ 1195736 (+)
G403972 NA other upstream 220083 604870 ~ 606350 (+)
G403609 NA other upstream 415645 364139 ~ 410788 (+)
G403578 NA other upstream 754162 35462 ~ 72271 (+)
G405609 NA other downstream 2325637 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3302298 4131060 ~ 4133941 (+)
G405842 NA other downstream 3466573 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 3660858 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 3873422 4703071 ~ 4704780 (+)

Expression


Co-expression Network