CI01000299_03478949_03486009


Basic Information

Item Value
gene id CI01000299_03478949_03486009
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3476088 ~ 3486009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_03478949_03486009.mRNA
CTATAAAAAAAGGTATTTGTTTGGTTATGGTAATAACAATATGATTTTATATCAAAATAACTTGCATTACAGTGTGTGTGTGTTCAGATCACAGTGCATGAAAATGTTTAAATTAGTGTAGTGCACTAGTGCCAGAGCTGAACATGTTCTGCTGTCTGATAGCGCCCCCTGCTGCTCATTGCATCTTCTTGACAAGAGGCACATTGTGCTGGAGAGACTGGGGCTAGTTGTCACATTTATTACAACAGTACTACTTATATTTTTTAAGTTAGGTCTATTTTAACCTGTAGGAATATATTACATACAAACTTAAAAACTTAAAAAAAATGATTATATATGTGTAAATACACAATTTCATTCATTTAACATTTGAGGTAAGTTGTCACAAGGAAACCTCCAATTTATTGACATTGTTTTGTGTATTGTTAAAAATTTATATACAAAATATTACTATTACTATATCAAAAGTTAAAAAAGCCTACATTTTGTTATAAAAGCAGAATTCAGAAAATAATGTTATATATATATATATATATTTTTTATTTAGTTTTGAACTAGGTGTTTGAAATTAATATGTGTAATTTAAGAGATACTATCCAGTGTGACAACAAGATCCTGTCTTCTGCACGTGTTACATTTGCTATGATAGTATAATATTATAAAACATGCATAATGGATACATATACAAAACCACTGTGGATTGTAACATATCCAACATTTTCAGTGTTAAACCTTATACTGTTTATTTGTCACTAATAAAAGCACTCTAGACTGCGCGAACACAGTGAAGGCGGCTGTATTCACAGGCGGAGGGTGAACCAACTCCACTTCCCCTTTAAAAACACATTTAAATAGATTTCCATGAAATAGTTTCAAGTTACGTGTTACTGCCTAGCAACAACCTACACATCCAAGCATAAACGCTCCCTATAAATTATTTGTTATTAAAGTGGTTATGTTCACAAACCACTGCCTTACCCAGTGCAGCCAAATCCTGTGTTTGGACCTGGCCCGGTTCCAGAATCGAATCACTGAGGCCGAGGTGCTTCAGAAATTAGTGGGGGTGCTCTATTCTTAATGCATCTATTTCAACATATCATATTTTAATCCCGTCCATTGCTGTTGCAATCACCACTATGTCAAATATTGCCATTTTGAGAGTGAATCCTGCATATATGTGGATGTCAATCCCAAAACTTTTGCAGTGTACATGGCCGCTGGTCAAGTAGCATATGAAAAACAAAAGTTTAATTCAAATTCTGAATATATATTAGGCCTATATATATATTATTAATATAGCCTATTGTCTAGAAAACGCGCAAGGAGCACTCCCTTTTTAATCACTAAAAAGCTGTCACTCACTTTAGTTAATCTCAATCTCACAAAGTTCTGTTATAATCAAAGAAGCTGACTGAACAATGAATCCCTTTGAGAGGTGAGTGGATTCTAACTTTTACAACTCTGATTGGACATTGCATTCAAGAAATCAACGGTTGTGTCTGTGATTGGCTACGTTTCTCAATGCTGCAAAAACACGTTATAGCTGCGAGCAGCAATTATCGGGTTAAAGTGGTTTAAGGTCTTTAAGCATATCCGTAAAAAGGTATTATGTTTTAATTAGCAAGCCTGTAACCATCTTAATCATAGATGGAAAAGTCCATTTACAGCCAATACAGGCAATTTACCAAAGGAAATATATGTTTTTTAAAGCTTTTTAACAGTTATCGAGGTTGAGCCAAAAACCTAGGATTAGTTCGCCAAAGTTGGTTTTTGAAATAATCACCAATATTTAACAAATGATTCGACAGACACCGGCGGTCCTAGAGGCAAAGTTGCTCAGGATGAGGAGTTCTACCATGTGGCATGAATGTTGTGGGCGTGTGTTAAAACTCGCGTGATATACAACCCTTTACGCATGTGAAAAACTCAAAAGCACCCACTGGTGGCCGATTTCTTTCGAATTTCTCACAGGGTAGGCCCGTGAGTCAAACAGGCCCAGCGAGTTTCATTCCAATCGGCCTCTGTTAACCTTGTCTGAAAGCCGCTCAAATTCATTGGCTGCCGCCGGCCGTGTTTTTCGAGATACATGAATGTCCTCAAAGGCAGTCTTGGCACCTTGGACCGCATACCAATTTTCAAGTCAATCAGACTTAGGGTTCCATAGTTATAGGCATTTTTAAGGGTTATAGCACCACCAAGTAGCCAGTTGCTGCGTCCTTTTTCACGCGACCACAGAATGAGCTCTTATGTATGTGTGCTGAGTTTGGTGAAAATATCTCATTCCGTTCACGAGTTATAGCCATTTTAGTTAAAGTGGCTCCTCCCACTTCGAACGTTTTGGCGGCCCTTAGGGACCGTGAAGCGAAATTTCATCTTTTTTTGATAATTATTGACAATCAGACTCCAGAGAATTTTGCTGCACTAGTTTGCAAAAGTAGGTTTTTAAAAAAATCCAAAATACCTGAAAACTTTAAAGTAAAAAACTTTAGGGGAGAATGCTGATCCTTGGGAATTTTAACAATTACAATAGGGTTTCAGCGCTACACGCTTGAACCCCTAAAAAGAAACCTTTGATACTCTCCAGAGTGCAAACACAGATACACACTGGATAGTTTGCCAAATGTTTCGTTGATATGCTATCATGACGGAGAAAACGGAGCAGTTATTGGCAGCTTTTACCTCTAAAAGCAATCCGAAGCAGCAGTAGTCACTCAGTAGTTTGAGTGAGATAATTCCAGTGGAAGGCCAAGCCTTGCCCAGCCTTACACATGCTCCACCTATGGTTGTTTTAATGAATAACCCTGAGTCATACACTCAGGTTGGTCTGTTGGGTTGACTAGCAGGAGCTCTAGAAAAGGGAAATGGCTCAGAGACATTTTGAGGGAAAAGAACATGCTGAATCTTACCAGCGTCACCGGGTGTCTCCTCCTCAGGAACTCATAGATGAAGTGCTGAACTTCCTCCGAAAAAGAATAAAGGAGGAGCTTGATCTGGCAGTGGATGTGGGCTGTGGATCAGGACAGGGCACTGAGCTACTGGCCCCTCACTTTATGACTGTGGTCGGGACAGATATCAGTTCAGCTCAACTGGAGATAGCCGAGGCTAAAGATCATGCAGCAAACTTGTGTTACAGACAGAGTCCTGCAGAGGAGTTGCCCTTTGAGGATGATGTGGCCGACTTGGTTACATCCATGTCAGCTGCTCACTGGTTTGACCATCCGCGCTTCCTGCGGGAGGCAGACAGGATTCTGAGGCCAGGAGGCTGCCTCGCTCTGCTCAGCTACACCTTGGATTTTGAGCTGGAATATGGAGAAAGTACCTCGAAACTCAATGAAATCTGTCAAGAGTTCTATGCAGCCCTGCTCCCTTTTCGGAAAGCTTATATAGGATCCAGTTCCCTCCAACTGTACAAGAAGATCTATGACCTTGTTTCATACGATGATAAAGAGTGGCACGAATGTCTGAAGGTTCGGATGATGATGCCACTGTCAAGGTTCATTGGCTTGGTTGAAACTTTCTCTTCCTATCAAGGTTTTCTGGAGAAGGATCCTGTTGAGGCCAAGAAACTGTCTCAGACCATCACAGACAGGTGTGTGAGCGTGTGTATGTTGGTCTGCTGGTATGCTGACGTTAGCCA
>TU466194
GTGATTGGCTACGTTTCTCAATGCTGCAAAAACACGTTATAGCTGCGAGCAGCAATTATCGGGTTAAAGTGGTTTAAGGTCTTTAAGCATATCCGTAAAAAGGTATTATGTTTTAATTAGCAAGCCTGTAACCATCTTAATCATAGATGGAAAAGTCCATTTACAGCCAATACAGGCAATTTACCAAAGGAAATATATGTTTTTTAAAGCTTTTTAACAGTTATCGAG

Function

NR:

description
Zgc:162780 protein

GO:

id name namespace
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_03478949_03486009.mRNA False 3637 mRNA 0.40 6 3476088 3486009
TU466194 True 228 lncRNA 0.35 1 3477589 3477816

Neighbor

gene id symbol gene type direction distance location
CI01000299_03453437_03453736 NA coding upstream 21879 3452300 ~ 3454209 (+)
CI01000299_03382616_03423028 NA coding upstream 52391 3382491 ~ 3423697 (+)
CI01000299_03366963_03373293 NA coding upstream 102406 3366818 ~ 3373682 (+)
CI01000299_03268500_03312490 HECW2 coding upstream 162760 3268193 ~ 3313328 (+)
CI01000299_03267154_03267336 NA coding upstream 208697 3267154 ~ 3267391 (+)
CI01000299_03495286_03498691 NA coding downstream 8530 3494539 ~ 3498729 (+)
CI01000299_03594891_03678552 ERBB4 coding downstream 108882 3594891 ~ 3679612 (+)
CI01000299_03981006_04059237 ERBB4 coding downstream 494997 3981006 ~ 4059237 (+)
CI01000299_04105476_04115171 LANCL1 coding downstream 619467 4105476 ~ 4115227 (+)
CI01000299_04122601_04126314 MLE3, MYLZ3, MYL1 coding downstream 636592 4122601 ~ 4126381 (+)
G405697 NA non-coding upstream 3473 3472375 ~ 3472615 (+)
G405695 NA non-coding upstream 6889 3468997 ~ 3469199 (+)
G405693 NA non-coding upstream 8308 3467518 ~ 3467780 (+)
G405690 NA non-coding upstream 13506 3462378 ~ 3462582 (+)
G405663 NA non-coding upstream 65324 3410534 ~ 3410764 (+)
G405575 NA non-coding downstream 19286 3505295 ~ 3535698 (+)
G405579 NA non-coding downstream 66305 3552314 ~ 3557103 (+)
G405710 NA non-coding downstream 212419 3698428 ~ 3725180 (+)
G405742 NA non-coding downstream 292024 3778033 ~ 3783926 (+)
G405578 NA non-coding downstream 407011 3893020 ~ 3912958 (+)
G405609 NA other upstream 320914 3154597 ~ 3155174 (+)
G403972 NA other upstream 2869738 604870 ~ 606350 (+)
G403609 NA other upstream 3065300 364139 ~ 410788 (+)
G403578 NA other upstream 3403817 35462 ~ 72271 (+)
CI01000299_04131136_04133439 PCNP other downstream 645249 4131060 ~ 4133941 (+)
G405842 NA other downstream 809524 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 1003809 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 1216373 4703071 ~ 4704780 (+)
G406096 NA other downstream 1438453 4924462 ~ 4927844 (+)

Expression


Co-expression Network