CI01000299_04864582_04885052 (RUNX1)


Basic Information

Item Value
gene id CI01000299_04864582_04885052
gene name RUNX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4864192 ~ 4885385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04864582_04885052.mRNA
CTATTTAAAACACGAGCCTCTATATACACTAGCTAGTCATCCAACCCTTTGACCGTTGAACCTCTTCACTGTGGTAGCGGAGTGCAGTAATGCCATTTTTGTGGGCTGTATTTTAGATATTTGACATTGCAGCAGCCTCGTGGGAAAACAAGGAACGACTTCTGAAGGTGTTCGTGATATGCGAATCGTGATGACAGAGCAGTTAGTCAACAGAATGACTAGCTTCTAAGAAATGAAGAGGAGTCCCACAGGGCTCTATTCAAGGCCCGATGTGATTTCGTTGATATAGCCCTCCACACTAATGTAAAAGGCCTAATGCTCATTTATGTTTCAGAACCTGCGCCTGGGCGACGCTTCACGCCTCCCTCGACCACGCTGAGCTCGGGGAAGATGAACGAGGGGTTGCCGCTGGGGGCTCAGGAAAGCAGCGGCGCCGCCCTGGTGGGCAAACTGCGCATGGCTGACCGGAGCATGGTGGAGGTGCTTTCCGACCACCCAGGAGAGCTGGTGCGCACCGACAGCCCCAACTTCCTCTGCTCCGTCCTGCCAACACACTGGCGCTGCAATAAAACCCTGCCCATCGCTTTCAAGGTGGTTGCCCTCGGCGATATCCCTGACGGCACGCTGGTCACCGTGATGGCCGGCAACGATGAGAACTATTCTGCCGAACTCCGCAACGCCACGGCTGCCATCAAGAACCAAGTGGCACGTTTCAACGACCTGCGTTTCGTCGGCCGCAGCGGACGAGGAAAGAGCTTCACTCTCACCATCACCGTCTTCACGAACCCTCCTCAGGTGGCCACTTATCAGAGAGCCATCAAGATCACTGTGGACGGACCCCGAGAACCACGCCGCCACCGACAGAAGCCGGATGAAGCGGTAAAGCCAGGCGCGTTAGCTTTCTCTGAGCAGTTGAGGCGAAGTGCCATGCGGTGCAGTCCACACCACGGCCCCGCCCCCAACCCCCGCCCCGCCCTCAACACGCCCCCCTTCAGCAGCCCCGCCCACAGCCAGATTCCCGGTCCAGATCTGACGGCGTTCACTGACCCTCGCGTCGGCCTGGAGCGTTCCTTCCCCTCGCTCCCCTCCCTACCAGACGGCCGTTTCTCGGATCCGCGCGTGCCGTACCCCACCGGGGCGTTTACGTACACGCCCACCCCTGTCACCAACGCCATCGGCATCGGCATGTCGGCTATGACAAGCCCCGCGGGCCGCTACCACACATACTTACCGCCGGCGTACCCCGCGGGGTCCTCGCAGGCTCAGGCCGGACCCTTCCAGGCCGGCTCGTCCCCGTATCACCTCTACTACAGCAGTGCCGCCGGATCCTACCAGTTCTCCATGATGCCGGGCGGAGGAGGAGGCGAGCGCTCGCCGCCGCGCATCTTACCGCCCTGCACCAACGCCTCCACAGGCTCCGCCCTCCTGCACCCCTCTCTGCCCAATCAGAGCGACGTCGTGGTGGAGGCCGAAGGAAGCCACAGCAGTTCGCCGACCAACATGTCGGTCGAAGCCGTCTGGAGGCCGTATTGACGTTTGAACAGGTCGACGGACAGTCGGCTTGACCAATAGGACGCGGGCAGCTGAACGAGGCGGTTTCTGATTAGAGCAATTGACTCAAAGGACAGACTTTTTCACAGCACAGCATGAGACTCGCTTGCTTTTTTTAAAGTGGATAGTTTGTATTATTATTATTATTATTATTAAAATTATTGTTGTTGTTGTTATTATTATTATTACTGTTGTTCGTCTCATCATCACTGTACTTTTATCAGTGCCTCTGTGTTTTATGTCAAACAAAACCTCACCATGTTTCGTCAAAGGCCAGAAACACACTCTATGCAAGTATTTAAATGCATATCGCTA

Function

symbol description
runx1 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including cardiac muscle tissue regeneration; positive regulation of collagen biosynthetic process; and regulation of connective tissue replacement. Acts upstream of or within several processes, including endothelial to hematopoietic transition; hemopoiesis; and regulation of gene expression. Predicted to be located in nucleus. Is expressed in several structures, including cranial ganglion; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Human ortholog(s) of this gene implicated in acute myeloid leukemia and esophagus squamous cell carcinoma. Orthologous to human RUNX1 (RUNX family transcription factor 1).

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG:

id description
K08367 RUNX1, AML1; runt-related transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04864582_04885052.mRNA True 1866 mRNA 0.56 5 4864192 4885385

Neighbor

gene id symbol gene type direction distance location
CI01000299_04819297_04829755 NA coding upstream 34205 4818685 ~ 4829987 (+)
CI01000299_04736806_04740333 CLIC6 coding upstream 123217 4736806 ~ 4740975 (+)
CI01000299_04703290_04704365 NA coding upstream 159595 4703071 ~ 4704780 (+)
CI01000299_04554181_04557794 NA coding upstream 306352 4554111 ~ 4557840 (+)
CI01000299_04532498_04539703 NA coding upstream 324273 4532098 ~ 4539919 (+)
CI01000299_04892566_04900169 NA coding downstream 5006 4890391 ~ 4900536 (+)
CI01000299_04906697_04907091 NA coding downstream 21312 4906697 ~ 4910073 (+)
CI01000299_05128395_05192154 NA coding downstream 242963 5128348 ~ 5192994 (+)
CI01000299_05254419_05314859 NA coding downstream 369034 5254419 ~ 5316243 (+)
CI01000299_05331367_05364944 NA coding downstream 445816 5331201 ~ 5364977 (+)
G406023 NA non-coding upstream 97969 4690895 ~ 4766223 (+)
G405967 NA non-coding upstream 192297 4671525 ~ 4671895 (+)
G405966 NA non-coding upstream 192710 4671215 ~ 4671482 (+)
G405865 NA non-coding upstream 199148 4649936 ~ 4665044 (+)
G405999 NA non-coding downstream 48930 4934315 ~ 4936448 (+)
G406101 NA non-coding downstream 70765 4956150 ~ 4956356 (+)
G406134 NA non-coding downstream 371354 5256739 ~ 5257212 (+)
G406203 NA non-coding downstream 426783 5312168 ~ 5745426 (+)
CI01000299_04480751_04492829 NA other upstream 358275 4480553 ~ 4493116 (+)
G405842 NA other upstream 544051 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 730251 4131060 ~ 4133941 (+)
G405609 NA other upstream 1709018 3154597 ~ 3155174 (+)
G406096 NA other downstream 39077 4924462 ~ 4927844 (+)
G406244 NA other downstream 485796 5371181 ~ 5373579 (+)
G406161 NA other downstream 1352453 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000934 runx1 coding NC_007112.7 CM002885.2 1362932 ~ 1402303 (-)
eurasian perch (Perca fluviatilis) G236326 runx1,LOC104961881 non-coding NC_053135.1 CM020932.1 20633878 ~ 20635879 (-)
bowfin (Amia calva) AMCG00014112 NA coding CM030128.1 CM030128.1 2008602 ~ 2022266 (+)