CI01000299_06197276_06199730 (TFDP1)


Basic Information

Item Value
gene id CI01000299_06197276_06199730
gene name TFDP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6196606 ~ 6199730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06197276_06199730.mRNA
GCGCAGCAGGAAGGGCGATAAGAGCGGGAAGGGTTTGCGGCATTTCTCCATGAAAGTGTGTGAGAAGGTGCAGAAGAAGGTGGTGACGTCCTACAACGAGGTGGCGGACGAGCTGGTGGCGGAGTTCAGCTCCGGAGACAACAACATCTCTCCGAACGAGGCGCACGTGTACGATCAGAAGAACATCCGCAGACGGGTTTACGACGCTCTGAACGTCCTGATGGCCATGAACATCATCTCCAAAGACAAGAAGGAGATCAAATGGATCGGATTCCCCACCAACTCTGCGCAGGAATGTCAGGATCTGGAGGCCGAGCGACAGAGGCGACTCGAGAGGATTAAACACAAACAGTCTCAGCTGCAGGAGCTCATACTGCAGCAAATCGCCTTCAAGAACCTGGTGCAGCGCAATCGTCAGGCGGAGCAGCAGAGTAAGAGAGCTCCGCCTCCAAACACGGTCATTCACCTGCCCTTCATCATCGTCAACACCAGCAAGAGAACCGTCATCGACTGCAGCATCTCCAACGACAAGTTTGAGTATCTGTTCAACTTCGACAACATGTTTGAGATCCACGATGACGTGGAGGTGCTGAAGCGCATGGGCCTGGCGTTCGGCCTGGAGTCGGGCCGCTGCAGCCCGGAGCAGCTGAAGATCGCCAAGACCCTCGTTCCCAAAGCCCTGCAGCCCTACGTCACAGAAATGGCTCAGGGTGCCATCAACCAGCTGATCGGAGAGCTGTCCCATGTGGCCACGGCTACTGTTGAAGAATCCTGCGGTGTGAGGTGTGACACGGGGACTTTTATCACTGTTTGCTGAATTTTGTACCCTGTTTTGTTGTGATTTGCTCTCATAGGCAGCTATTTTTGATATTGGAGCTTTTTATTTTGGACGTGGAGCTCTGATGACCGCAGCTCTGAGAACATGAAATCAACAACTCAAACGTCCAGCCCTTTTTGTACAATGTAACAAATACTAAAGAAAATATACTTTTCTTATTCATGTATAGAAATTAAACAGAATGAATGATTTATGTGCTTGTGTGGTTCTTTGTGCTCTCAGTGAAATAACATTATCAGATGTTTCAGTGAAAGATATTAATAATGAAGATGTTTTCATTTAAATGATTGAGAAAATAACACGGATGCGAGCGGCTCGATGCAACACGTCAAAAGACAATATACCCATTATAATCAGAGATATTGTCTACACTGGATGCGACAACAAATTTCCGACACAGTGTCTACACCAGACGCGACCGTTGTCGCATCGCTCTGCAACAGCTCAAAGCTGTCTACACTGAACACGACAAACCGACTGAGGCAAAGCACTTGGACTACTTCAGAAATAGAACGGGGAATCCATTTACTGTCGGGAAATTGTTGTGTTGCGCCGTCCAGTGTAGACAATATCACTGATTAAAACGGGTTCTTTTGTCTTTAGACACATTGCAGACATGGTGTAAGGGAAAATAATATATATGAATAAA

Function

symbol description
tfdp1 Enables protein domain specific binding activity. Contributes to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of G1/S transition of mitotic cell cycle; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

GO:

id name namespace
GO:0070345 negative regulation of fat cell proliferation biological_process

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06197276_06199730.mRNA True 1487 mRNA 0.48 7 6196606 6199730

Neighbor

gene id symbol gene type direction distance location
CI01000299_06185794_06195015 GRK1A, GRK1 coding downstream 1591 6185488 ~ 6195015 (-)
CI01000299_06145156_06154533 NA coding downstream 42073 6144955 ~ 6154533 (-)
CI01000299_06130943_06144384 NA coding downstream 51738 6129073 ~ 6144868 (-)
CI01000299_06037407_06054548 TPP2 coding downstream 142058 6036217 ~ 6054548 (-)
CI01000299_05974659_05985294 NA coding downstream 211000 5974391 ~ 5985606 (-)
CI01000299_06208641_06214104 TMCO3 coding upstream 8882 6208612 ~ 6214104 (-)
CI01000299_06242885_06246604 LAMP1 coding upstream 42266 6241996 ~ 6246604 (-)
CI01000299_06257032_06266210 CUL4A coding upstream 56127 6255857 ~ 6266210 (-)
CI01000299_06268189_06268676 NA coding upstream 68459 6268189 ~ 6269395 (-)
CI01000299_06274590_06278765 PROZ coding upstream 74697 6274427 ~ 6279132 (-)
G407975 NA non-coding downstream 13071 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 50682 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 82116 6108478 ~ 6114490 (-)
G407912 NA non-coding downstream 89353 6099848 ~ 6107253 (-)
G407909 NA non-coding downstream 97148 6093291 ~ 6099458 (-)
G407923 NA non-coding upstream 21036 6220766 ~ 6222379 (-)
G407939 NA non-coding upstream 26682 6226412 ~ 6232275 (-)
G407986 NA non-coding upstream 189646 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 192314 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 217396 6417126 ~ 6432767 (-)
G407805 NA other downstream 360617 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 740498 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1267788 4913373 ~ 4927715 (-)
G407413 NA other downstream 1645885 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 332271 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location